Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28806 | 5' | -58.7 | NC_006146.1 | + | 115355 | 0.69 | 0.644874 |
Target: 5'- aGGCCUUCCUGgccGGCguGGCGGCGg-- -3' miRNA: 3'- -CCGGGGGGACaaaCUG--UCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 68055 | 0.67 | 0.761653 |
Target: 5'- cGGCUgCCCUGgcUGccaACAGgGGgGUGg -3' miRNA: 3'- -CCGGgGGGACaaAC---UGUCgCCgCACa -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 114335 | 0.68 | 0.714064 |
Target: 5'- cGGCCgCCCCUGacggaggugGACGGgGGCcUGg -3' miRNA: 3'- -CCGG-GGGGACaaa------CUGUCgCCGcACa -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 117859 | 0.68 | 0.712119 |
Target: 5'- cGCCCCCCUuaccucuCGGCGGCGg-- -3' miRNA: 3'- cCGGGGGGAcaaacu-GUCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 106465 | 0.68 | 0.704313 |
Target: 5'- aGCCCCUCUGUcuccUGGCAGCGuacgccgcCGUGg -3' miRNA: 3'- cCGGGGGGACAa---ACUGUCGCc-------GCACa -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 96212 | 0.68 | 0.703334 |
Target: 5'- aGCCCCCCUGUUcucuCAagaauuagccuguGCGuGCGUGUu -3' miRNA: 3'- cCGGGGGGACAAacu-GU-------------CGC-CGCACA- -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 118053 | 0.68 | 0.694503 |
Target: 5'- aGCCCCCggGcgggGGCGGCGGCGg-- -3' miRNA: 3'- cCGGGGGgaCaaa-CUGUCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 122636 | 0.68 | 0.682666 |
Target: 5'- gGGCCCUCUUucgcgccagGACGGCGGCGg-- -3' miRNA: 3'- -CCGGGGGGAcaaa-----CUGUCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 115210 | 0.69 | 0.664809 |
Target: 5'- aGCCCCCC-----GGCGGCGGcCGUGc -3' miRNA: 3'- cCGGGGGGacaaaCUGUCGCC-GCACa -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 115921 | 0.67 | 0.770877 |
Target: 5'- cGGCCaCCCCggGUacgggGGCAGCGGUa--- -3' miRNA: 3'- -CCGG-GGGGa-CAaa---CUGUCGCCGcaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 19946 | 0.67 | 0.778172 |
Target: 5'- cGGCCUCCCUGggcagaucagGGcCGGgGGCGUc- -3' miRNA: 3'- -CCGGGGGGACaaa-------CU-GUCgCCGCAca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 88997 | 0.67 | 0.779078 |
Target: 5'- aGGCUCCCCauaUGUUUGGCA-CGGagccugcCGUGg -3' miRNA: 3'- -CCGGGGGG---ACAAACUGUcGCC-------GCACa -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 115151 | 0.66 | 0.831687 |
Target: 5'- uGGCCCgCCgccg-GGCGGUggagaucuugGGCGUGUa -3' miRNA: 3'- -CCGGGgGGacaaaCUGUCG----------CCGCACA- -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 123383 | 0.66 | 0.831687 |
Target: 5'- gGGCCCCgcaaCCUGgcuggaacUGGCcGCGGCGg-- -3' miRNA: 3'- -CCGGGG----GGACaa------ACUGuCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 36472 | 0.66 | 0.823458 |
Target: 5'- aGGCUacagCCUUGUUUGaguaGCAGUGGCacGUGUg -3' miRNA: 3'- -CCGGg---GGGACAAAC----UGUCGCCG--CACA- -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 18891 | 0.66 | 0.818441 |
Target: 5'- aGCCCCCaCUGUgcUucuaccgagacacccUGACGGUGGUGggggGUa -3' miRNA: 3'- cCGGGGG-GACA--A---------------ACUGUCGCCGCa---CA- -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 11134 | 0.66 | 0.797809 |
Target: 5'- cGGCCUaCCUGgg-GGCGGUGGUGg-- -3' miRNA: 3'- -CCGGGgGGACaaaCUGUCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 6503 | 0.66 | 0.797809 |
Target: 5'- uGGUCCUuggaugcuCCUGacccUUGGCGGCGGCGg-- -3' miRNA: 3'- -CCGGGG--------GGACa---AACUGUCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 61414 | 0.67 | 0.788963 |
Target: 5'- uGGCCgCCCUcagGUUUcacGACAGUGGUGg-- -3' miRNA: 3'- -CCGGgGGGA---CAAA---CUGUCGCCGCaca -5' |
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28806 | 5' | -58.7 | NC_006146.1 | + | 24036 | 0.67 | 0.788963 |
Target: 5'- cGUCCCCCUGgcggggUGAC-GCGGCc--- -3' miRNA: 3'- cCGGGGGGACaa----ACUGuCGCCGcaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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