miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 5' -58.7 NC_006146.1 + 6503 0.66 0.797809
Target:  5'- uGGUCCUuggaugcuCCUGacccUUGGCGGCGGCGg-- -3'
miRNA:   3'- -CCGGGG--------GGACa---AACUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 11134 0.66 0.797809
Target:  5'- cGGCCUaCCUGgg-GGCGGUGGUGg-- -3'
miRNA:   3'- -CCGGGgGGACaaaCUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 13122 0.66 0.806512
Target:  5'- cGGCCUCuCCUGg--GGCAGCaGGCu--- -3'
miRNA:   3'- -CCGGGG-GGACaaaCUGUCG-CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 16200 0.66 0.806512
Target:  5'- cGGCCUCuCCUGg--GGCAGCaGGCu--- -3'
miRNA:   3'- -CCGGGG-GGACaaaCUGUCG-CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 18891 0.66 0.818441
Target:  5'- aGCCCCCaCUGUgcUucuaccgagacacccUGACGGUGGUGggggGUa -3'
miRNA:   3'- cCGGGGG-GACA--A---------------ACUGUCGCCGCa---CA- -5'
28806 5' -58.7 NC_006146.1 + 19278 0.66 0.806512
Target:  5'- cGGCCUCuCCUGg--GGCAGCaGGCu--- -3'
miRNA:   3'- -CCGGGG-GGACaaaCUGUCG-CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 19946 0.67 0.778172
Target:  5'- cGGCCUCCCUGggcagaucagGGcCGGgGGCGUc- -3'
miRNA:   3'- -CCGGGGGGACaaa-------CU-GUCgCCGCAca -5'
28806 5' -58.7 NC_006146.1 + 22356 0.66 0.806512
Target:  5'- cGGCCUCuCCUGg--GGCAGCaGGCu--- -3'
miRNA:   3'- -CCGGGG-GGACaaaCUGUCG-CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 24036 0.67 0.788963
Target:  5'- cGUCCCCCUGgcggggUGAC-GCGGCc--- -3'
miRNA:   3'- cCGGGGGGACaa----ACUGuCGCCGcaca -5'
28806 5' -58.7 NC_006146.1 + 25434 0.66 0.806512
Target:  5'- cGGCCUCuCCUGg--GGCAGCaGGCu--- -3'
miRNA:   3'- -CCGGGG-GGACaaaCUGUCG-CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 28512 0.66 0.806512
Target:  5'- cGGCCUCuCCUGg--GGCAGCaGGCu--- -3'
miRNA:   3'- -CCGGGG-GGACaaaCUGUCG-CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 36472 0.66 0.823458
Target:  5'- aGGCUacagCCUUGUUUGaguaGCAGUGGCacGUGUg -3'
miRNA:   3'- -CCGGg---GGGACAAAC----UGUCGCCG--CACA- -5'
28806 5' -58.7 NC_006146.1 + 44717 0.69 0.651859
Target:  5'- uGGCCCCCgCUGgccggccugaugcggUGGCcgcgGGCGGCuGUGg -3'
miRNA:   3'- -CCGGGGG-GACaa-------------ACUG----UCGCCG-CACa -5'
28806 5' -58.7 NC_006146.1 + 44820 0.66 0.831687
Target:  5'- aGGCCCCgCUGcggcuggUGACGGaGGUggGUGUa -3'
miRNA:   3'- -CCGGGGgGACaa-----ACUGUCgCCG--CACA- -5'
28806 5' -58.7 NC_006146.1 + 46440 0.74 0.375679
Target:  5'- gGGCCCCCa-GgaaGGCGGCGGCGUa- -3'
miRNA:   3'- -CCGGGGGgaCaaaCUGUCGCCGCAca -5'
28806 5' -58.7 NC_006146.1 + 53145 0.67 0.788963
Target:  5'- uGCCUCCuCUGUggcggcGACuGCGGCG-GUg -3'
miRNA:   3'- cCGGGGG-GACAaa----CUGuCGCCGCaCA- -5'
28806 5' -58.7 NC_006146.1 + 53193 0.7 0.594997
Target:  5'- cGGCCCCggCCUug--GGgGGCGGCGUGc -3'
miRNA:   3'- -CCGGGG--GGAcaaaCUgUCGCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 55008 0.66 0.797809
Target:  5'- aGCCCCCCgGgcggGAUGGgGGCGg-- -3'
miRNA:   3'- cCGGGGGGaCaaa-CUGUCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 56829 0.68 0.704313
Target:  5'- uGGCCCCCgaGgcggccucUGGCGGCGGgGg-- -3'
miRNA:   3'- -CCGGGGGgaCaa------ACUGUCGCCgCaca -5'
28806 5' -58.7 NC_006146.1 + 61414 0.67 0.788963
Target:  5'- uGGCCgCCCUcagGUUUcacGACAGUGGUGg-- -3'
miRNA:   3'- -CCGGgGGGA---CAAA---CUGUCGCCGCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.