miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 5' -58.7 NC_006146.1 + 170559 0.67 0.788963
Target:  5'- cGCCCuCCCUcugcucccGUUggccgggagaaUGACAGCugGGCGUGg -3'
miRNA:   3'- cCGGG-GGGA--------CAA-----------ACUGUCG--CCGCACa -5'
28806 5' -58.7 NC_006146.1 + 170395 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 169464 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 168695 0.67 0.788963
Target:  5'- cGCCCuCCCUcugcucccGUUggcggggagaaUGACAGCugGGCGUGg -3'
miRNA:   3'- cCGGG-GGGA--------CAA-----------ACUGUCG--CCGCACa -5'
28806 5' -58.7 NC_006146.1 + 168532 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 167763 0.67 0.788963
Target:  5'- cGCCCuCCCUcugcucccGUUggcggggagaaUGACAGCugGGCGUGg -3'
miRNA:   3'- cCGGG-GGGA--------CAA-----------ACUGUCG--CCGCACa -5'
28806 5' -58.7 NC_006146.1 + 167600 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 137977 0.69 0.65485
Target:  5'- gGGCCUCCCgGg--GGCccGGCGGgGUGg -3'
miRNA:   3'- -CCGGGGGGaCaaaCUG--UCGCCgCACa -5'
28806 5' -58.7 NC_006146.1 + 127836 0.71 0.53702
Target:  5'- aGCCuCCCCUGgagggugggcuugGGCAGcCGGCGUGc -3'
miRNA:   3'- cCGG-GGGGACaaa----------CUGUC-GCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 126605 0.72 0.488544
Target:  5'- aGCCCCCacuaccgGUUUGGCGGUGGUcgGUGg -3'
miRNA:   3'- cCGGGGGga-----CAAACUGUCGCCG--CACa -5'
28806 5' -58.7 NC_006146.1 + 123383 0.66 0.831687
Target:  5'- gGGCCCCgcaaCCUGgcuggaacUGGCcGCGGCGg-- -3'
miRNA:   3'- -CCGGGG----GGACaa------ACUGuCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 122636 0.68 0.682666
Target:  5'- gGGCCCUCUUucgcgccagGACGGCGGCGg-- -3'
miRNA:   3'- -CCGGGGGGAcaaa-----CUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 120743 0.72 0.470094
Target:  5'- cGCCCCCCUGguccUGACgacgagcgcuGGCGGCGc-- -3'
miRNA:   3'- cCGGGGGGACaa--ACUG----------UCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 119916 0.72 0.488544
Target:  5'- cGCCCUCUUGcggucagugUUGGCAGCGGCGcUGc -3'
miRNA:   3'- cCGGGGGGACa--------AACUGUCGCCGC-ACa -5'
28806 5' -58.7 NC_006146.1 + 119315 0.67 0.788071
Target:  5'- uGGCCCCUCUGgcucccccgGGCcccucccGGCGGCGc-- -3'
miRNA:   3'- -CCGGGGGGACaaa------CUG-------UCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 118053 0.68 0.694503
Target:  5'- aGCCCCCggGcgggGGCGGCGGCGg-- -3'
miRNA:   3'- cCGGGGGgaCaaa-CUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 117859 0.68 0.712119
Target:  5'- cGCCCCCCUuaccucuCGGCGGCGg-- -3'
miRNA:   3'- cCGGGGGGAcaaacu-GUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 117854 0.66 0.831687
Target:  5'- uGCUCCCCaacuugaUGACAGCGGC-UGa -3'
miRNA:   3'- cCGGGGGGacaa---ACUGUCGCCGcACa -5'
28806 5' -58.7 NC_006146.1 + 115921 0.67 0.770877
Target:  5'- cGGCCaCCCCggGUacgggGGCAGCGGUa--- -3'
miRNA:   3'- -CCGG-GGGGa-CAaa---CUGUCGCCGcaca -5'
28806 5' -58.7 NC_006146.1 + 115355 0.69 0.644874
Target:  5'- aGGCCUUCCUGgccGGCguGGCGGCGg-- -3'
miRNA:   3'- -CCGGGGGGACaaaCUG--UCGCCGCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.