miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 3' -66.5 NC_006146.1 + 100732 1.09 0.00042
Target:  5'- gACCGGCCUCGCCGGCCACCAGCGCCCc -3'
miRNA:   3'- -UGGCCGGAGCGGCCGGUGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 118813 0.79 0.068141
Target:  5'- -aUGGCCUCGCCGGCCcCCGaccGCaGCCCu -3'
miRNA:   3'- ugGCCGGAGCGGCCGGuGGU---CG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 122553 0.78 0.079064
Target:  5'- gGCCGGCC-CGCUGGCCagACUGGaCGCCUg -3'
miRNA:   3'- -UGGCCGGaGCGGCCGG--UGGUC-GCGGG- -5'
28810 3' -66.5 NC_006146.1 + 143557 0.77 0.087257
Target:  5'- cCCGGCCUUGCCGcGCCACCcgcuguuuuuggAGgGCCa -3'
miRNA:   3'- uGGCCGGAGCGGC-CGGUGG------------UCgCGGg -5'
28810 3' -66.5 NC_006146.1 + 42843 0.77 0.096254
Target:  5'- --gGGCCUCGagGGCCGCCAG-GCCCa -3'
miRNA:   3'- uggCCGGAGCggCCGGUGGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 56595 0.77 0.098637
Target:  5'- cGCCGaGCCcgcCGCCGGUCuccucGCCGGCGUCCa -3'
miRNA:   3'- -UGGC-CGGa--GCGGCCGG-----UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 2682 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 818 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 1750 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 3614 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 46971 0.76 0.106123
Target:  5'- cGCCGGCC-CgGCC-GCCGCCAggaauuGCGCCCg -3'
miRNA:   3'- -UGGCCGGaG-CGGcCGGUGGU------CGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 103693 0.75 0.119797
Target:  5'- gGCCGGCCaggCGaCCGGCCacgGCCAGUGgaauCCCa -3'
miRNA:   3'- -UGGCCGGa--GC-GGCCGG---UGGUCGC----GGG- -5'
28810 3' -66.5 NC_006146.1 + 26155 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 23077 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 16922 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 22943 0.75 0.122722
Target:  5'- uUCGGCCUCucgguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG------------CGGCCGGU--------GGUCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 19999 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 29233 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 13844 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 13709 0.75 0.125411
Target:  5'- uUCGGCCUCucggguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG-------------CGGCCGGU--------GGUCG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.