miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 3' -66.5 NC_006146.1 + 240 0.68 0.377782
Target:  5'- cCUGGCCUCccCCGcGCCgAUCugcGCGCCCa -3'
miRNA:   3'- uGGCCGGAGc-GGC-CGG-UGGu--CGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 245 0.67 0.417054
Target:  5'- uACCGGCCUUGCUcucucacucuuGCUACUuGCgGCCCu -3'
miRNA:   3'- -UGGCCGGAGCGGc----------CGGUGGuCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 302 0.67 0.425202
Target:  5'- gGCgGGCC-CGgCGcGCuCGCCA-CGCCCa -3'
miRNA:   3'- -UGgCCGGaGCgGC-CG-GUGGUcGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 530 0.66 0.475995
Target:  5'- cCCGGCCUCcacacaCGGCCucuCCGcGgGCCUc -3'
miRNA:   3'- uGGCCGGAGcg----GCCGGu--GGU-CgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 702 0.75 0.135095
Target:  5'- cGCUGGCCccCGCCaGGCC-CCGGCcccGCCCu -3'
miRNA:   3'- -UGGCCGGa-GCGG-CCGGuGGUCG---CGGG- -5'
28810 3' -66.5 NC_006146.1 + 751 0.66 0.484754
Target:  5'- cCCGGCCggCGCC-GCCGCgCGuGCaGCCg -3'
miRNA:   3'- uGGCCGGa-GCGGcCGGUG-GU-CG-CGGg -5'
28810 3' -66.5 NC_006146.1 + 818 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 938 0.74 0.145118
Target:  5'- cGCCGGCCUC-CCgucccgaaGGCCcugGCaCAGUGCCCa -3'
miRNA:   3'- -UGGCCGGAGcGG--------CCGG---UG-GUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 1233 0.68 0.348206
Target:  5'- gGCgGGCCaCGCgCGcCCGCCA-CGCCCa -3'
miRNA:   3'- -UGgCCGGaGCG-GCcGGUGGUcGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 1461 0.66 0.475995
Target:  5'- cCCGGCCUCcacacaCGGCCucuCCGcGgGCCUc -3'
miRNA:   3'- uGGCCGGAGcg----GCCGGu--GGU-CgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 1633 0.75 0.135095
Target:  5'- cGCUGGCCccCGCCaGGCC-CCGGCcccGCCCu -3'
miRNA:   3'- -UGGCCGGa-GCGG-CCGGuGGUCG---CGGG- -5'
28810 3' -66.5 NC_006146.1 + 1682 0.66 0.484754
Target:  5'- cCCGGCCggCGCC-GCCGCgCGuGCaGCCg -3'
miRNA:   3'- uGGCCGGa-GCGGcCGGUG-GU-CG-CGGg -5'
28810 3' -66.5 NC_006146.1 + 1750 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 1870 0.74 0.145118
Target:  5'- cGCCGGCCUC-CCgucccgaaGGCCcugGCaCAGUGCCCa -3'
miRNA:   3'- -UGGCCGGAGcGG--------CCGG---UG-GUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 2165 0.68 0.348206
Target:  5'- gGCgGGCCaCGCgCGcCCGCCA-CGCCCa -3'
miRNA:   3'- -UGgCCGGaGCG-GCcGGUGGUcGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 2393 0.66 0.475995
Target:  5'- cCCGGCCUCcacacaCGGCCucuCCGcGgGCCUc -3'
miRNA:   3'- uGGCCGGAGcg----GCCGGu--GGU-CgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 2565 0.75 0.135095
Target:  5'- cGCUGGCCccCGCCaGGCC-CCGGCcccGCCCu -3'
miRNA:   3'- -UGGCCGGa-GCGG-CCGGuGGUCG---CGGG- -5'
28810 3' -66.5 NC_006146.1 + 2614 0.66 0.484754
Target:  5'- cCCGGCCggCGCC-GCCGCgCGuGCaGCCg -3'
miRNA:   3'- uGGCCGGa-GCGGcCGGUG-GU-CG-CGGg -5'
28810 3' -66.5 NC_006146.1 + 2682 0.76 0.104584
Target:  5'- cGCCGGCCccuccCGCCGGCCAuccccacgcgcggccCCGG-GCCCu -3'
miRNA:   3'- -UGGCCGGa----GCGGCCGGU---------------GGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 2802 0.74 0.145118
Target:  5'- cGCCGGCCUC-CCgucccgaaGGCCcugGCaCAGUGCCCa -3'
miRNA:   3'- -UGGCCGGAGcGG--------CCGG---UG-GUCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.