miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 3' -66.5 NC_006146.1 + 143557 0.77 0.087257
Target:  5'- cCCGGCCUUGCCGcGCCACCcgcuguuuuuggAGgGCCa -3'
miRNA:   3'- uGGCCGGAGCGGC-CGGUGG------------UCgCGGg -5'
28810 3' -66.5 NC_006146.1 + 150178 0.75 0.131898
Target:  5'- cGCgGGuCCUCGCaGGCCGCCAGCaGCUUc -3'
miRNA:   3'- -UGgCC-GGAGCGgCCGGUGGUCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 56512 0.75 0.138364
Target:  5'- gGCCgcggGGUCgUCGCCGGCCAUCAGCaGCUg -3'
miRNA:   3'- -UGG----CCGG-AGCGGCCGGUGGUCG-CGGg -5'
28810 3' -66.5 NC_006146.1 + 134670 0.66 0.502498
Target:  5'- aGCCGcccuGCCUCcuccCCGGCCGgCuuGCGCUCc -3'
miRNA:   3'- -UGGC----CGGAGc---GGCCGGUgGu-CGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 16922 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 19999 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 23077 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 26155 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 16787 0.75 0.125411
Target:  5'- uUCGGCCUCucggguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG-------------CGGCCGGU--------GGUCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 151928 0.75 0.125713
Target:  5'- uCCGGCCcUGCCgcccucucuaggGGCCGCUGGCGCCa -3'
miRNA:   3'- uGGCCGGaGCGG------------CCGGUGGUCGCGGg -5'
28810 3' -66.5 NC_006146.1 + 26020 0.75 0.125411
Target:  5'- uUCGGCCUCucggguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG-------------CGGCCGGU--------GGUCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 13709 0.75 0.125411
Target:  5'- uUCGGCCUCucggguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG-------------CGGCCGGU--------GGUCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 56595 0.77 0.098637
Target:  5'- cGCCGaGCCcgcCGCCGGUCuccucGCCGGCGUCCa -3'
miRNA:   3'- -UGGC-CGGa--GCGGCCGG-----UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 29098 0.75 0.125411
Target:  5'- uUCGGCCUCucggguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG-------------CGGCCGGU--------GGUCG-CGGG- -5'
28810 3' -66.5 NC_006146.1 + 46971 0.76 0.106123
Target:  5'- cGCCGGCC-CgGCC-GCCGCCAggaauuGCGCCCg -3'
miRNA:   3'- -UGGCCGGaG-CGGcCGGUGGU------CGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 29233 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 48674 0.75 0.125713
Target:  5'- cCUGGCCcaugcuUCGCCGGCCuCCcuCGCCCg -3'
miRNA:   3'- uGGCCGG------AGCGGCCGGuGGucGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 56166 0.75 0.136394
Target:  5'- gGCCGuCCUUGaggaugcgccgauacUCGGCCGCCAGgGCCCg -3'
miRNA:   3'- -UGGCcGGAGC---------------GGCCGGUGGUCgCGGG- -5'
28810 3' -66.5 NC_006146.1 + 13844 0.75 0.122722
Target:  5'- gGCCGGCCggagggacccCGgCGGCCcgguguGCCAGCGUCCc -3'
miRNA:   3'- -UGGCCGGa---------GCgGCCGG------UGGUCGCGGG- -5'
28810 3' -66.5 NC_006146.1 + 22943 0.75 0.122722
Target:  5'- uUCGGCCUCucgguccaccagGCCGGCCGgagggaccCCGGCaGCCCg -3'
miRNA:   3'- uGGCCGGAG------------CGGCCGGU--------GGUCG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.