miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 5' -53.4 NC_006146.1 + 100768 1.11 0.004001
Target:  5'- gCCAGGCGAAGGCGGCAAAGAUCAGUGg -3'
miRNA:   3'- -GGUCCGCUUCCGCCGUUUCUAGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 118057 0.81 0.332561
Target:  5'- cCCGGGCGggGGCGGCGgcGGcUCGGc- -3'
miRNA:   3'- -GGUCCGCuuCCGCCGUuuCU-AGUCac -5'
28810 5' -53.4 NC_006146.1 + 44533 0.8 0.347998
Target:  5'- aCGGGCGGAGGaCGGUggGGGgcugCGGUGg -3'
miRNA:   3'- gGUCCGCUUCC-GCCGuuUCUa---GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 90656 0.78 0.432583
Target:  5'- gCCGcGGCGAGGGUGGCAGAGGUUucaAGa- -3'
miRNA:   3'- -GGU-CCGCUUCCGCCGUUUCUAG---UCac -5'
28810 5' -53.4 NC_006146.1 + 123525 0.77 0.508199
Target:  5'- cCCAGGCGGgucgcGGGUGGCAAGGAgaccgucgCAGa- -3'
miRNA:   3'- -GGUCCGCU-----UCCGCCGUUUCUa-------GUCac -5'
28810 5' -53.4 NC_006146.1 + 129249 0.76 0.527991
Target:  5'- cCCAGGUG-AGGC-GCGAGGGUCAGg- -3'
miRNA:   3'- -GGUCCGCuUCCGcCGUUUCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 131023 0.76 0.578588
Target:  5'- gCCAGcCGGAGGCGGCAAGGAugcUCAa-- -3'
miRNA:   3'- -GGUCcGCUUCCGCCGUUUCU---AGUcac -5'
28810 5' -53.4 NC_006146.1 + 32058 0.75 0.599147
Target:  5'- cCCGGGCGu-GGCGaGCAucGGUCAGcUGa -3'
miRNA:   3'- -GGUCCGCuuCCGC-CGUuuCUAGUC-AC- -5'
28810 5' -53.4 NC_006146.1 + 135888 0.75 0.599147
Target:  5'- cCCGGGCGu-GGCGaGCAucGGUCAGcUGa -3'
miRNA:   3'- -GGUCCGCuuCCGC-CGUuuCUAGUC-AC- -5'
28810 5' -53.4 NC_006146.1 + 40283 0.75 0.599147
Target:  5'- gCGGGCGGAGGCGGgcCAAAGAggcCGGg- -3'
miRNA:   3'- gGUCCGCUUCCGCC--GUUUCUa--GUCac -5'
28810 5' -53.4 NC_006146.1 + 103737 0.74 0.6405
Target:  5'- gCGGGCGAAGGUGuaGGAGGUCAu-- -3'
miRNA:   3'- gGUCCGCUUCCGCcgUUUCUAGUcac -5'
28810 5' -53.4 NC_006146.1 + 4674 0.74 0.661168
Target:  5'- gCCGGGUGGgcgAGGCGGgGGcAGAUCAGa- -3'
miRNA:   3'- -GGUCCGCU---UCCGCCgUU-UCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 6119 0.74 0.67147
Target:  5'- --cGGUGGAGGCGGUggGGAUcCAGa- -3'
miRNA:   3'- gguCCGCUUCCGCCGuuUCUA-GUCac -5'
28810 5' -53.4 NC_006146.1 + 116338 0.74 0.68174
Target:  5'- -aGGGgGAAGGCGGCGAAGGgaCGGa- -3'
miRNA:   3'- ggUCCgCUUCCGCCGUUUCUa-GUCac -5'
28810 5' -53.4 NC_006146.1 + 55264 0.73 0.702145
Target:  5'- cCCGGGCGAA-GCGGCucguGGGgcucgCGGUGg -3'
miRNA:   3'- -GGUCCGCUUcCGCCGuu--UCUa----GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 157290 0.73 0.702145
Target:  5'- cCCAgGGUGggGGUGGCAAAGA-CAa-- -3'
miRNA:   3'- -GGU-CCGCuuCCGCCGUUUCUaGUcac -5'
28810 5' -53.4 NC_006146.1 + 156674 0.73 0.712262
Target:  5'- -uGGGCGAgguuugGGGCGGCuGGGGGUCGGg- -3'
miRNA:   3'- ggUCCGCU------UCCGCCG-UUUCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 147440 0.73 0.731284
Target:  5'- -uGGGCGAgguuuggGGGCGGCuGGGGGUCGGg- -3'
miRNA:   3'- ggUCCGCU-------UCCGCCG-UUUCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 150518 0.73 0.731284
Target:  5'- -uGGGCGAgguuuggGGGCGGCuGGGGGUCGGg- -3'
miRNA:   3'- ggUCCGCU-------UCCGCCG-UUUCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 153596 0.73 0.731284
Target:  5'- -uGGGCGAgguuuggGGGCGGCuGGGGGUCGGg- -3'
miRNA:   3'- ggUCCGCU-------UCCGCCG-UUUCUAGUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.