miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 5' -53.4 NC_006146.1 + 4674 0.74 0.661168
Target:  5'- gCCGGGUGGgcgAGGCGGgGGcAGAUCAGa- -3'
miRNA:   3'- -GGUCCGCU---UCCGCCgUU-UCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 6119 0.74 0.67147
Target:  5'- --cGGUGGAGGCGGUggGGAUcCAGa- -3'
miRNA:   3'- gguCCGCUUCCGCCGuuUCUA-GUCac -5'
28810 5' -53.4 NC_006146.1 + 6218 0.7 0.87343
Target:  5'- --cGGUGAAGGUGGUGGAGA-CAGg- -3'
miRNA:   3'- gguCCGCUUCCGCCGUUUCUaGUCac -5'
28810 5' -53.4 NC_006146.1 + 6523 0.69 0.887701
Target:  5'- cCCuuGGCGgcGGCGGCAA----CAGUGu -3'
miRNA:   3'- -GGu-CCGCuuCCGCCGUUucuaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 11431 0.69 0.913449
Target:  5'- aCCAGGCcAAGGUGGCcAAGGUggCGGc- -3'
miRNA:   3'- -GGUCCGcUUCCGCCGuUUCUA--GUCac -5'
28810 5' -53.4 NC_006146.1 + 13059 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 14007 0.68 0.919285
Target:  5'- gCCGGGCuggugcugGAAGGCggagGGCAGGGAgCAGg- -3'
miRNA:   3'- -GGUCCG--------CUUCCG----CCGUUUCUaGUCac -5'
28810 5' -53.4 NC_006146.1 + 16137 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 19215 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 20275 0.69 0.887701
Target:  5'- uCCAcGUGGAGGUGGCcGAGAUCGc-- -3'
miRNA:   3'- -GGUcCGCUUCCGCCGuUUCUAGUcac -5'
28810 5' -53.4 NC_006146.1 + 22293 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 23723 0.72 0.780595
Target:  5'- aCCGGGCGAAGG-GGCGccGGUCu--- -3'
miRNA:   3'- -GGUCCGCUUCCgCCGUuuCUAGucac -5'
28810 5' -53.4 NC_006146.1 + 25371 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 28449 0.66 0.976047
Target:  5'- uCCGGGCcccAAGGCGGCcgcccUCAGUc -3'
miRNA:   3'- -GGUCCGc--UUCCGCCGuuucuAGUCAc -5'
28810 5' -53.4 NC_006146.1 + 32058 0.75 0.599147
Target:  5'- cCCGGGCGu-GGCGaGCAucGGUCAGcUGa -3'
miRNA:   3'- -GGUCCGCuuCCGC-CGUuuCUAGUC-AC- -5'
28810 5' -53.4 NC_006146.1 + 37678 0.66 0.967601
Target:  5'- -gGGGCuGggGGCaacgaGGCAAGGAgcccaGGUGa -3'
miRNA:   3'- ggUCCG-CuuCCG-----CCGUUUCUag---UCAC- -5'
28810 5' -53.4 NC_006146.1 + 39671 0.66 0.978466
Target:  5'- uCCAGGCucuGGgGGCGuuGAGA-CAGUa -3'
miRNA:   3'- -GGUCCGcuuCCgCCGU--UUCUaGUCAc -5'
28810 5' -53.4 NC_006146.1 + 40283 0.75 0.599147
Target:  5'- gCGGGCGGAGGCGGgcCAAAGAggcCGGg- -3'
miRNA:   3'- gGUCCGCUUCCGCC--GUUUCUa--GUCac -5'
28810 5' -53.4 NC_006146.1 + 40450 0.7 0.880678
Target:  5'- gUAGGCGGGuGCGGCAAuggccuGGUgGGUGa -3'
miRNA:   3'- gGUCCGCUUcCGCCGUUu-----CUAgUCAC- -5'
28810 5' -53.4 NC_006146.1 + 43744 0.67 0.953329
Target:  5'- gUCGGGgGuugcGGCGGaCAGAGAggAGUGg -3'
miRNA:   3'- -GGUCCgCuu--CCGCC-GUUUCUagUCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.