miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 5' -53.4 NC_006146.1 + 44533 0.8 0.347998
Target:  5'- aCGGGCGGAGGaCGGUggGGGgcugCGGUGg -3'
miRNA:   3'- gGUCCGCUUCC-GCCGuuUCUa---GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 54022 0.68 0.919285
Target:  5'- aCCAGGUggcgccuccgGAGGGCGGCcauGucggCGGUGg -3'
miRNA:   3'- -GGUCCG----------CUUCCGCCGuuuCua--GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 147822 0.68 0.924878
Target:  5'- aCCAGGaGAAGGCG-CAGAuGAggcCGGUGa -3'
miRNA:   3'- -GGUCCgCUUCCGCcGUUU-CUa--GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 39671 0.66 0.978466
Target:  5'- uCCAGGCucuGGgGGCGuuGAGA-CAGUa -3'
miRNA:   3'- -GGUCCGcuuCCgCCGU--UUCUaGUCAc -5'
28810 5' -53.4 NC_006146.1 + 157290 0.73 0.702145
Target:  5'- cCCAgGGUGggGGUGGCAAAGA-CAa-- -3'
miRNA:   3'- -GGU-CCGCuuCCGCCGUUUCUaGUcac -5'
28810 5' -53.4 NC_006146.1 + 55264 0.73 0.702145
Target:  5'- cCCGGGCGAA-GCGGCucguGGGgcucgCGGUGg -3'
miRNA:   3'- -GGUCCGCUUcCGCCGuu--UCUa----GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 113705 0.72 0.780595
Target:  5'- cCCGGGgaCGgcGGCGGCAGccGGGaCGGUGa -3'
miRNA:   3'- -GGUCC--GCuuCCGCCGUU--UCUaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 155711 0.7 0.858276
Target:  5'- uCgAGGUGAAGGCGGCc--GcgCAGUc -3'
miRNA:   3'- -GgUCCGCUUCCGCCGuuuCuaGUCAc -5'
28810 5' -53.4 NC_006146.1 + 81165 0.69 0.886315
Target:  5'- cCCAGcGCGAaagcgucGGGCugucguguccacaGGC-GAGGUCAGUGg -3'
miRNA:   3'- -GGUC-CGCU-------UCCG-------------CCGuUUCUAGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 53751 0.69 0.913449
Target:  5'- cCgGGGCGAagacGGGCGGCGggcgGAGGUCu--- -3'
miRNA:   3'- -GgUCCGCU----UCCGCCGU----UUCUAGucac -5'
28810 5' -53.4 NC_006146.1 + 133822 0.69 0.90737
Target:  5'- cUCAGGgGAGGG-GGUGAGGAU-GGUGg -3'
miRNA:   3'- -GGUCCgCUUCCgCCGUUUCUAgUCAC- -5'
28810 5' -53.4 NC_006146.1 + 149828 0.7 0.880678
Target:  5'- uCCGGGUGGuguGGGCGGCcAGGGccUCGGc- -3'
miRNA:   3'- -GGUCCGCU---UCCGCCGuUUCU--AGUCac -5'
28810 5' -53.4 NC_006146.1 + 90656 0.78 0.432583
Target:  5'- gCCGcGGCGAGGGUGGCAGAGGUUucaAGa- -3'
miRNA:   3'- -GGU-CCGCUUCCGCCGUUUCUAG---UCac -5'
28810 5' -53.4 NC_006146.1 + 66798 0.69 0.90737
Target:  5'- aCCGGGCccAGGCGGCGcauGAGG-CGGa- -3'
miRNA:   3'- -GGUCCGcuUCCGCCGU---UUCUaGUCac -5'
28810 5' -53.4 NC_006146.1 + 103737 0.74 0.6405
Target:  5'- gCGGGCGAAGGUGuaGGAGGUCAu-- -3'
miRNA:   3'- gGUCCGCUUCCGCcgUUUCUAGUcac -5'
28810 5' -53.4 NC_006146.1 + 54722 0.7 0.858276
Target:  5'- cCCGGGUcAGGGCGGCcgaggGGAGAcUCAGg- -3'
miRNA:   3'- -GGUCCGcUUCCGCCG-----UUUCU-AGUCac -5'
28810 5' -53.4 NC_006146.1 + 115658 0.69 0.913449
Target:  5'- cCCGGGCGggGGUcauGGUGgagcuguagcuGAGAcCGGUGu -3'
miRNA:   3'- -GGUCCGCuuCCG---CCGU-----------UUCUaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 139169 0.68 0.919285
Target:  5'- -gGGGCGccuguGAGGCGGCuguuguugucaAAGGggCGGUGg -3'
miRNA:   3'- ggUCCGC-----UUCCGCCG-----------UUUCuaGUCAC- -5'
28810 5' -53.4 NC_006146.1 + 4674 0.74 0.661168
Target:  5'- gCCGGGUGGgcgAGGCGGgGGcAGAUCAGa- -3'
miRNA:   3'- -GGUCCGCU---UCCGCCgUU-UCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 55013 0.72 0.761611
Target:  5'- cCCGGGCGGgaugggggcGGGCGGgAugGGGGUCGGg- -3'
miRNA:   3'- -GGUCCGCU---------UCCGCCgU--UUCUAGUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.