miRNA display CGI


Results 21 - 40 of 264 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 50417 0.73 0.319462
Target:  5'- cCGCCAGGGACGgCAGGCaGGCCg---- -3'
miRNA:   3'- -GCGGUCUCUGUgGUCCG-CCGGgcacc -5'
28811 5' -61.5 NC_006146.1 + 13619 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 22853 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 43259 0.73 0.319462
Target:  5'- aGCCcaccgAGAGGCACaGGGCGGCCUGgaGGu -3'
miRNA:   3'- gCGG-----UCUCUGUGgUCCGCCGGGCa-CC- -5'
28811 5' -61.5 NC_006146.1 + 168928 0.73 0.333523
Target:  5'- -cUCGGAGACG--AGGgGGCCCGUGGa -3'
miRNA:   3'- gcGGUCUCUGUggUCCgCCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 19890 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 155583 0.73 0.348033
Target:  5'- cCGCCAGGGGCACaccgGGGCuGGCCUccGGc -3'
miRNA:   3'- -GCGGUCUCUGUGg---UCCG-CCGGGcaCC- -5'
28811 5' -61.5 NC_006146.1 + 13734 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 22967 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 29123 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 16812 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 26045 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 25758 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 22680 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 19602 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 28836 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 15025 0.72 0.370631
Target:  5'- uGCCAGggagGGGCGCCuGGCcagGGCCCGccGGg -3'
miRNA:   3'- gCGGUC----UCUGUGGuCCG---CCGGGCa-CC- -5'
28811 5' -61.5 NC_006146.1 + 16524 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 13446 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 70013 0.72 0.386243
Target:  5'- gGCC-GAGAC-CCAGGCcgacaGGUCCGUGa -3'
miRNA:   3'- gCGGuCUCUGuGGUCCG-----CCGGGCACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.