miRNA display CGI


Results 21 - 40 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 16812 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 16926 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 17574 0.69 0.524289
Target:  5'- cCGCCAGAucaaucgGAUGCUGGGCgaccuGGCCCG-GGc -3'
miRNA:   3'- -GCGGUCU-------CUGUGGUCCG-----CCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 17678 0.75 0.267697
Target:  5'- cCGUCAuGuccGGCAUCuacGGGCGGCCCGUGGc -3'
miRNA:   3'- -GCGGU-Cu--CUGUGG---UCCGCCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 19256 0.68 0.572621
Target:  5'- -cCCAGGGuCGCCAGGCggGGUCCGgccucuccUGGg -3'
miRNA:   3'- gcGGUCUCuGUGGUCCG--CCGGGC--------ACC- -5'
28811 5' -61.5 NC_006146.1 + 19602 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 19775 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 19890 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 20003 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 22334 0.68 0.572621
Target:  5'- -cCCAGGGuCGCCAGGCggGGUCCGgccucuccUGGg -3'
miRNA:   3'- gcGGUCUCuGUGGUCCG--CCGGGC--------ACC- -5'
28811 5' -61.5 NC_006146.1 + 22680 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 22853 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 22967 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 23081 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 23462 0.67 0.64039
Target:  5'- gGCCuacGAGGCccuggccgugGCCAGGUacgGGCUgGUGGg -3'
miRNA:   3'- gCGGu--CUCUG----------UGGUCCG---CCGGgCACC- -5'
28811 5' -61.5 NC_006146.1 + 24096 0.66 0.726704
Target:  5'- uCGCCuGGGACGCgggucgaGGGCGGCUgGcaccGGg -3'
miRNA:   3'- -GCGGuCUCUGUGg------UCCGCCGGgCa---CC- -5'
28811 5' -61.5 NC_006146.1 + 25412 0.68 0.572621
Target:  5'- -cCCAGGGuCGCCAGGCggGGUCCGgccucuccUGGg -3'
miRNA:   3'- gcGGUCUCuGUGGUCCG--CCGGGC--------ACC- -5'
28811 5' -61.5 NC_006146.1 + 25758 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 25931 0.68 0.620957
Target:  5'- -cCCAGAGACGcCCAGGa-GCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgcCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 26045 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.