miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 571 0.67 0.678163
Target:  5'- gGCCucccaggAGAGGgGCCGGgggcGCGGCCCGg-- -3'
miRNA:   3'- gCGG-------UCUCUgUGGUC----CGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 1502 0.67 0.678163
Target:  5'- gGCCucccaggAGAGGgGCCGGgggcGCGGCCCGg-- -3'
miRNA:   3'- gCGG-------UCUCUgUGGUC----CGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 2434 0.67 0.678163
Target:  5'- gGCCucccaggAGAGGgGCCGGgggcGCGGCCCGg-- -3'
miRNA:   3'- gCGG-------UCUCUgUGGUC----CGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 2784 0.67 0.636503
Target:  5'- uGUCAGggaAGACGCCAGGCgccagcaGGCCUuccagaccaaggcgGUGGc -3'
miRNA:   3'- gCGGUC---UCUGUGGUCCG-------CCGGG--------------CACC- -5'
28811 5' -61.5 NC_006146.1 + 3366 0.67 0.678163
Target:  5'- gGCCucccaggAGAGGgGCCGGgggcGCGGCCCGg-- -3'
miRNA:   3'- gCGG-------UCUCUgUGGUC----CGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 5094 0.71 0.443312
Target:  5'- gGCCAGGGACGCCccccuAGcCGGCcgugccaCCGUGGc -3'
miRNA:   3'- gCGGUCUCUGUGG-----UCcGCCG-------GGCACC- -5'
28811 5' -61.5 NC_006146.1 + 11435 0.69 0.525223
Target:  5'- gGCCAaGGugGCCAagguGGCGGCCCucaaGGa -3'
miRNA:   3'- gCGGUcUCugUGGU----CCGCCGGGca--CC- -5'
28811 5' -61.5 NC_006146.1 + 13100 0.68 0.572621
Target:  5'- -cCCAGGGuCGCCAGGCggGGUCCGgccucuccUGGg -3'
miRNA:   3'- gcGGUCUCuGUGGUCCG--CCGGGC--------ACC- -5'
28811 5' -61.5 NC_006146.1 + 13446 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 13558 0.66 0.717304
Target:  5'- gCGCC--GGGCGCCGGGCugcgcaagcaGGCCgG-GGg -3'
miRNA:   3'- -GCGGucUCUGUGGUCCG----------CCGGgCaCC- -5'
28811 5' -61.5 NC_006146.1 + 13619 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 13734 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 13848 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 15025 0.72 0.370631
Target:  5'- uGCCAGggagGGGCGCCuGGCcagGGCCCGccGGg -3'
miRNA:   3'- gCGGUC----UCUGUGGuCCG---CCGGGCa-CC- -5'
28811 5' -61.5 NC_006146.1 + 15312 0.69 0.553511
Target:  5'- gGCCGGAGGCcaGCCccGGUGuGCCCcUGGc -3'
miRNA:   3'- gCGGUCUCUG--UGGu-CCGC-CGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 15409 0.7 0.506671
Target:  5'- aCGCCAG-GugGCCucagagGGGCuGGCCCGg-- -3'
miRNA:   3'- -GCGGUCuCugUGG------UCCG-CCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 16178 0.68 0.572621
Target:  5'- -cCCAGGGuCGCCAGGCggGGUCCGgccucuccUGGg -3'
miRNA:   3'- gcGGUCUCuGUGGUCCG--CCGGGC--------ACC- -5'
28811 5' -61.5 NC_006146.1 + 16524 0.72 0.370631
Target:  5'- aGCCGGAGGgACCccGGCaGCCCG-GGu -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 16697 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 16700 0.7 0.470453
Target:  5'- aGCCAGAcgcagguccacGACGCCccgGGGUGGauaCUGUGGa -3'
miRNA:   3'- gCGGUCU-----------CUGUGG---UCCGCCg--GGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.