miRNA display CGI


Results 1 - 20 of 264 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 170670 0.71 0.444174
Target:  5'- gCGCgGGGGAgGCCAGGgGcGCCCcggGGa -3'
miRNA:   3'- -GCGgUCUCUgUGGUCCgC-CGGGca-CC- -5'
28811 5' -61.5 NC_006146.1 + 169960 0.69 0.524289
Target:  5'- uGCCAGggccuucgggacgGGAgGCCGGcGCGcGCCCG-GGg -3'
miRNA:   3'- gCGGUC-------------UCUgUGGUC-CGC-CGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 169739 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 169028 0.69 0.524289
Target:  5'- uGCCAGggccuucgggacgGGAgGCCGGcGCGcGCCCG-GGg -3'
miRNA:   3'- gCGGUC-------------UCUgUGGUC-CGC-CGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 168928 0.73 0.333523
Target:  5'- -cUCGGAGACG--AGGgGGCCCGUGGa -3'
miRNA:   3'- gcGGUCUCUGUggUCCgCCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 168807 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 168096 0.69 0.524289
Target:  5'- uGCCAGggccuucgggacgGGAgGCCGGcGCGcGCCCG-GGg -3'
miRNA:   3'- gCGGUC-------------UCUgUGGUC-CGC-CGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 167875 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 167809 0.69 0.544027
Target:  5'- gGCCGGAGAagagcuCCAGaGCGGUCUGgacGGu -3'
miRNA:   3'- gCGGUCUCUgu----GGUC-CGCCGGGCa--CC- -5'
28811 5' -61.5 NC_006146.1 + 167164 0.69 0.524289
Target:  5'- uGCCAGggccuucgggacgGGAgGCCGGcGCGcGCCCG-GGg -3'
miRNA:   3'- gCGGUC-------------UCUgUGGUC-CGC-CGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 166186 0.68 0.601556
Target:  5'- aGCCgugcguGGGGAUugCAGGUGGUCuCGgggGGa -3'
miRNA:   3'- gCGG------UCUCUGugGUCCGCCGG-GCa--CC- -5'
28811 5' -61.5 NC_006146.1 + 160071 0.69 0.534596
Target:  5'- gGCaCAGucAGGCACCu-GUGGCCCGUGu -3'
miRNA:   3'- gCG-GUC--UCUGUGGucCGCCGGGCACc -5'
28811 5' -61.5 NC_006146.1 + 158428 0.72 0.402284
Target:  5'- aGCCGGAGu--CCAGaGgGGCCCGaGGg -3'
miRNA:   3'- gCGGUCUCuguGGUC-CgCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 158309 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 157728 0.67 0.659798
Target:  5'- gGCCGGGcAgGCCGGGCaGGCCgGgucuUGGg -3'
miRNA:   3'- gCGGUCUcUgUGGUCCG-CCGGgC----ACC- -5'
28811 5' -61.5 NC_006146.1 + 157603 0.71 0.444174
Target:  5'- aGaCCAGgaGGACGCCuggAGGCGGaCCCGaGGg -3'
miRNA:   3'- gC-GGUC--UCUGUGG---UCCGCC-GGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 157175 0.67 0.679127
Target:  5'- uGCCGGGGuCccuCCGGcCGGCCUgGUGGa -3'
miRNA:   3'- gCGGUCUCuGu--GGUCcGCCGGG-CACC- -5'
28811 5' -61.5 NC_006146.1 + 157060 0.68 0.582236
Target:  5'- cCGCCGGGGuCccuCCGGcCGGCCUGaUGGa -3'
miRNA:   3'- -GCGGUCUCuGu--GGUCcGCCGGGC-ACC- -5'
28811 5' -61.5 NC_006146.1 + 157011 0.67 0.679127
Target:  5'- uGCCuGGAGGCagagACUGGGCGGCUgCGgGGg -3'
miRNA:   3'- gCGG-UCUCUG----UGGUCCGCCGG-GCaCC- -5'
28811 5' -61.5 NC_006146.1 + 155867 0.68 0.601556
Target:  5'- gGCCcGAGAC-CUGGG-GGCCCG-GGc -3'
miRNA:   3'- gCGGuCUCUGuGGUCCgCCGGGCaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.