miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 78450 0.66 0.745275
Target:  5'- cCGCCAauucAGACcCCAGGCGGgCCa--- -3'
miRNA:   3'- -GCGGUc---UCUGuGGUCCGCCgGGcacc -5'
28811 5' -61.5 NC_006146.1 + 114602 0.66 0.726704
Target:  5'- gGCCuGGGcCACCucgAGGCGGCgC-UGGa -3'
miRNA:   3'- gCGGuCUCuGUGG---UCCGCCGgGcACC- -5'
28811 5' -61.5 NC_006146.1 + 111624 0.66 0.725767
Target:  5'- uGCCAGcccagguccgcgaAGACgucgGCCAGGCccugaacacccaGGCCCaUGGa -3'
miRNA:   3'- gCGGUC-------------UCUG----UGGUCCG------------CCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 71216 0.66 0.723891
Target:  5'- cCGCCGGGGGCuucgaguCCuGGCuggucaacuccuggGGCCUGgcgGGg -3'
miRNA:   3'- -GCGGUCUCUGu------GGuCCG--------------CCGGGCa--CC- -5'
28811 5' -61.5 NC_006146.1 + 118967 0.66 0.717304
Target:  5'- gCGCgCAGAccGCACCgGGGCcGCCCGUcGGu -3'
miRNA:   3'- -GCG-GUCUc-UGUGG-UCCGcCGGGCA-CC- -5'
28811 5' -61.5 NC_006146.1 + 103693 0.66 0.717304
Target:  5'- gGCCGGccAGGCgACCGGccaCGGCCaGUGGa -3'
miRNA:   3'- gCGGUC--UCUG-UGGUCc--GCCGGgCACC- -5'
28811 5' -61.5 NC_006146.1 + 13558 0.66 0.717304
Target:  5'- gCGCC--GGGCGCCGGGCugcgcaagcaGGCCgG-GGg -3'
miRNA:   3'- -GCGGucUCUGUGGUCCG----------CCGGgCaCC- -5'
28811 5' -61.5 NC_006146.1 + 42375 0.66 0.707839
Target:  5'- cCGCCAGGGugGgCgAGGgGcGCCCcaGGg -3'
miRNA:   3'- -GCGGUCUCugU-GgUCCgC-CGGGcaCC- -5'
28811 5' -61.5 NC_006146.1 + 122631 0.66 0.707839
Target:  5'- gGCCGGGGcccucuuucGCGCCAGGaCGGCggCGgGGg -3'
miRNA:   3'- gCGGUCUC---------UGUGGUCC-GCCGg-GCaCC- -5'
28811 5' -61.5 NC_006146.1 + 24096 0.66 0.726704
Target:  5'- uCGCCuGGGACGCgggucgaGGGCGGCUgGcaccGGg -3'
miRNA:   3'- -GCGGuCUCUGUGg------UCCGCCGGgCa---CC- -5'
28811 5' -61.5 NC_006146.1 + 42287 0.66 0.726704
Target:  5'- -aCCGGGGAgGCCAGGUaGCCCa--- -3'
miRNA:   3'- gcGGUCUCUgUGGUCCGcCGGGcacc -5'
28811 5' -61.5 NC_006146.1 + 142918 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 123512 0.66 0.73603
Target:  5'- gGCCAcGGucGACcCCAGGCGGgUCGcGGg -3'
miRNA:   3'- gCGGU-CU--CUGuGGUCCGCCgGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 50887 0.66 0.73603
Target:  5'- uGcCCGGAcuGGCGCgGGuGCGGCCUG-GGc -3'
miRNA:   3'- gC-GGUCU--CUGUGgUC-CGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 31809 0.66 0.73603
Target:  5'- aCGCaacccaACuCCAGGCgaGGCCCGUGGc -3'
miRNA:   3'- -GCGgucuc-UGuGGUCCG--CCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 158309 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 155230 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 152152 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 149074 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5'
28811 5' -61.5 NC_006146.1 + 145996 0.66 0.726704
Target:  5'- gGCCucGAGG-GCCGGGUucugGGCuuGUGGg -3'
miRNA:   3'- gCGGu-CUCUgUGGUCCG----CCGggCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.