miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 13848 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 50417 0.73 0.319462
Target:  5'- cCGCCAGGGACGgCAGGCaGGCCg---- -3'
miRNA:   3'- -GCGGUCUCUGUgGUCCG-CCGGgcacc -5'
28811 5' -61.5 NC_006146.1 + 16812 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 78450 0.66 0.745275
Target:  5'- cCGCCAauucAGACcCCAGGCGGgCCa--- -3'
miRNA:   3'- -GCGGUc---UCUGuGGUCCGCCgGGcacc -5'
28811 5' -61.5 NC_006146.1 + 26159 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 29237 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 44946 0.76 0.222922
Target:  5'- gGCCAGGGGCGCgGGGaGGCCCcggGGg -3'
miRNA:   3'- gCGGUCUCUGUGgUCCgCCGGGca-CC- -5'
28811 5' -61.5 NC_006146.1 + 51916 0.75 0.250107
Target:  5'- gGCCuccGAGGCACCgacGGGCGGCCCcgGUGcGg -3'
miRNA:   3'- gCGGu--CUCUGUGG---UCCGCCGGG--CAC-C- -5'
28811 5' -61.5 NC_006146.1 + 169739 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 29008 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 16697 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 168807 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 16926 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 19775 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 20003 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 167875 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 22853 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 13734 0.73 0.348033
Target:  5'- gGCCGGAGGgACCccGGCaGCCCG-GGa -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGcCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 23081 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 43339 0.77 0.20302
Target:  5'- cCGcCCAGGGcCAgCAGGCGcaGCCCGUGGc -3'
miRNA:   3'- -GC-GGUCUCuGUgGUCCGC--CGGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.