miRNA display CGI


Results 1 - 20 of 264 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 100203 1.09 0.001247
Target:  5'- uCGCCAGAGACACCAGGCGGCCCGUGGc -3'
miRNA:   3'- -GCGGUCUCUGUGGUCCGCCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 23081 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 20003 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 16926 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 13848 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 29237 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 26159 0.78 0.167815
Target:  5'- gGCCGGAGGgACCccGGCGGCCCGg-- -3'
miRNA:   3'- gCGGUCUCUgUGGu-CCGCCGGGCacc -5'
28811 5' -61.5 NC_006146.1 + 43339 0.77 0.20302
Target:  5'- cCGcCCAGGGcCAgCAGGCGcaGCCCGUGGc -3'
miRNA:   3'- -GC-GGUCUCuGUgGUCCGC--CGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 102888 0.76 0.212771
Target:  5'- aGCCgcagGGGGACGCCAGG-GGCCgUGUGGc -3'
miRNA:   3'- gCGG----UCUCUGUGGUCCgCCGG-GCACC- -5'
28811 5' -61.5 NC_006146.1 + 44946 0.76 0.222922
Target:  5'- gGCCAGGGGCGCgGGGaGGCCCcggGGg -3'
miRNA:   3'- gCGGUCUCUGUGgUCCgCCGGGca-CC- -5'
28811 5' -61.5 NC_006146.1 + 51916 0.75 0.250107
Target:  5'- gGCCuccGAGGCACCgacGGGCGGCCCcgGUGcGg -3'
miRNA:   3'- gCGGu--CUCUGUGG---UCCGCCGGG--CAC-C- -5'
28811 5' -61.5 NC_006146.1 + 92068 0.75 0.255282
Target:  5'- gGCCuGGGGCugCugcugggGGGCGGCCCGgccugGGg -3'
miRNA:   3'- gCGGuCUCUGugG-------UCCGCCGGGCa----CC- -5'
28811 5' -61.5 NC_006146.1 + 17678 0.75 0.267697
Target:  5'- cCGUCAuGuccGGCAUCuacGGGCGGCCCGUGGc -3'
miRNA:   3'- -GCGGU-Cu--CUGUGG---UCCGCCGGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 167875 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 168807 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 169739 0.73 0.3126
Target:  5'- gCGCgGGGGA-GCCccgGGGCGGCCCG-GGg -3'
miRNA:   3'- -GCGgUCUCUgUGG---UCCGCCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 64693 0.73 0.3126
Target:  5'- -cCCAG-GACACCAGGCccuggcaggaGGCCCG-GGa -3'
miRNA:   3'- gcGGUCuCUGUGGUCCG----------CCGGGCaCC- -5'
28811 5' -61.5 NC_006146.1 + 43259 0.73 0.319462
Target:  5'- aGCCcaccgAGAGGCACaGGGCGGCCUGgaGGu -3'
miRNA:   3'- gCGG-----UCUCUGUGgUCCGCCGGGCa-CC- -5'
28811 5' -61.5 NC_006146.1 + 16697 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 13619 0.73 0.319462
Target:  5'- -cCCAGAGACGcCCAGGaGGCCC-UGGu -3'
miRNA:   3'- gcGGUCUCUGU-GGUCCgCCGGGcACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.