miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 3' -52.8 NC_006146.1 + 35144 0.66 0.985066
Target:  5'- -cCUGCcUCAccGUGGCAcACUAaUCCCCu -3'
miRNA:   3'- gaGAUGuAGU--CACCGU-UGGUcAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 162960 0.66 0.985066
Target:  5'- ---gGCAUCGGaguUGGCGggcGCCccuuucccgGGUCCCCc -3'
miRNA:   3'- gagaUGUAGUC---ACCGU---UGG---------UCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 1477 0.66 0.984527
Target:  5'- gUCUGucUCAGUggccuccugaccauGGCAGCCGG-CCUCg -3'
miRNA:   3'- gAGAUguAGUCA--------------CCGUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 124839 0.66 0.983212
Target:  5'- -cCUGCAgCAGcuaUGGCAcucGCUGcGUCCCCu -3'
miRNA:   3'- gaGAUGUaGUC---ACCGU---UGGU-CAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 110409 0.66 0.983212
Target:  5'- cCUCgcCGUCGG-GGgAGCUGGcCCCCc -3'
miRNA:   3'- -GAGauGUAGUCaCCgUUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 140687 0.66 0.983212
Target:  5'- uCUCUACcaUAGUGGgGGCUGGUUCUg -3'
miRNA:   3'- -GAGAUGuaGUCACCgUUGGUCAGGGg -5'
28812 3' -52.8 NC_006146.1 + 16206 0.66 0.978293
Target:  5'- -gCUGCAUCuG-GGCGcagaccacccagcaGCCAGcgCCCCc -3'
miRNA:   3'- gaGAUGUAGuCaCCGU--------------UGGUCa-GGGG- -5'
28812 3' -52.8 NC_006146.1 + 45407 0.66 0.976603
Target:  5'- ---cACGUCGGUGG--GCCAGcgcgaggCCCCg -3'
miRNA:   3'- gagaUGUAGUCACCguUGGUCa------GGGG- -5'
28812 3' -52.8 NC_006146.1 + 12036 0.66 0.976603
Target:  5'- -gCUACGUggCGGgugcGGCcACCAG-CCCCa -3'
miRNA:   3'- gaGAUGUA--GUCa---CCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 100785 0.66 0.976603
Target:  5'- ---aAgAUCAGUGGCAcgccuuagcaaACgGGUUCCCu -3'
miRNA:   3'- gagaUgUAGUCACCGU-----------UGgUCAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 56574 0.66 0.976603
Target:  5'- -cCUcCGUCAGgGGCGGCCGGgcgccgagCCCg -3'
miRNA:   3'- gaGAuGUAGUCaCCGUUGGUCa-------GGGg -5'
28812 3' -52.8 NC_006146.1 + 58531 0.67 0.974025
Target:  5'- uCUCUGCAagcggccggUCAgcGUGGCGGCCuacauGgagCCCUg -3'
miRNA:   3'- -GAGAUGU---------AGU--CACCGUUGGu----Ca--GGGG- -5'
28812 3' -52.8 NC_006146.1 + 121645 0.67 0.974025
Target:  5'- cCUCUACAg-GG-GGCuACCGG-CCCUg -3'
miRNA:   3'- -GAGAUGUagUCaCCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 43136 0.67 0.974025
Target:  5'- -gCUGCAgCAG-GGCAAUC--UCCCCa -3'
miRNA:   3'- gaGAUGUaGUCaCCGUUGGucAGGGG- -5'
28812 3' -52.8 NC_006146.1 + 155461 0.67 0.96826
Target:  5'- gCUCUGCugcgccaggCAGgacuGCAGCCGGgccagCCCCu -3'
miRNA:   3'- -GAGAUGua-------GUCac--CGUUGGUCa----GGGG- -5'
28812 3' -52.8 NC_006146.1 + 109052 0.67 0.96826
Target:  5'- cCUCUGCccCGGgagucccGGC-ACCAG-CCCCa -3'
miRNA:   3'- -GAGAUGuaGUCa------CCGuUGGUCaGGGG- -5'
28812 3' -52.8 NC_006146.1 + 85359 0.67 0.96506
Target:  5'- uCUCUAa---GGUGGUGGCCAGUUcgUCCa -3'
miRNA:   3'- -GAGAUguagUCACCGUUGGUCAG--GGG- -5'
28812 3' -52.8 NC_006146.1 + 101622 0.67 0.961641
Target:  5'- uCUUUACG-CGGUGGCAacgGCCGccguucGUCCaCCu -3'
miRNA:   3'- -GAGAUGUaGUCACCGU---UGGU------CAGG-GG- -5'
28812 3' -52.8 NC_006146.1 + 68354 0.67 0.961641
Target:  5'- cCUCcGCcgugucaguGUUGGUGGCAACCAGggCCUUg -3'
miRNA:   3'- -GAGaUG---------UAGUCACCGUUGGUCa-GGGG- -5'
28812 3' -52.8 NC_006146.1 + 123501 0.67 0.961641
Target:  5'- ----uCAUCAGcaUGGCGGCCAGacgCUCCa -3'
miRNA:   3'- gagauGUAGUC--ACCGUUGGUCa--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.