Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28812 | 3' | -52.8 | NC_006146.1 | + | 124839 | 0.66 | 0.983212 |
Target: 5'- -cCUGCAgCAGcuaUGGCAcucGCUGcGUCCCCu -3' miRNA: 3'- gaGAUGUaGUC---ACCGU---UGGU-CAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 99086 | 1.11 | 0.004522 |
Target: 5'- gCUCUACAUCAGUGGCAACCAGUCCCCc -3' miRNA: 3'- -GAGAUGUAGUCACCGUUGGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 140275 | 0.73 | 0.752873 |
Target: 5'- cCUCUuuCAUCAGUGGCAACaugUAGgauauacugCCCCc -3' miRNA: 3'- -GAGAu-GUAGUCACCGUUG---GUCa--------GGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 13246 | 0.72 | 0.800072 |
Target: 5'- uUCUACAUCAGccUGGUccaggGGCUGGUgCCCa -3' miRNA: 3'- gAGAUGUAGUC--ACCG-----UUGGUCAgGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 75961 | 0.71 | 0.826589 |
Target: 5'- cCUCUACcgCA---GCGGCCAcGUCCCCu -3' miRNA: 3'- -GAGAUGuaGUcacCGUUGGU-CAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 25689 | 0.71 | 0.835075 |
Target: 5'- uUCUACGUCuacccucaggAGUGGaAGCCGGgccagCCCCu -3' miRNA: 3'- gAGAUGUAG----------UCACCgUUGGUCa----GGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 60345 | 0.71 | 0.866286 |
Target: 5'- gUCUACucugCGGUgGGCAGCCucuuugaacaggaGGUCUCCg -3' miRNA: 3'- gAGAUGua--GUCA-CCGUUGG-------------UCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 118084 | 0.7 | 0.888764 |
Target: 5'- cCUCcGCAUCcugGGCAcggccucgugcaACCAGUCCCa -3' miRNA: 3'- -GAGaUGUAGucaCCGU------------UGGUCAGGGg -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 120914 | 0.69 | 0.914451 |
Target: 5'- uUCgUGCA-CAauGUGGCGGCCGGUCCa- -3' miRNA: 3'- gAG-AUGUaGU--CACCGUUGGUCAGGgg -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 24358 | 0.69 | 0.925837 |
Target: 5'- -gCUACAagUAGUGGCGcaggGCCAG-CUCCa -3' miRNA: 3'- gaGAUGUa-GUCACCGU----UGGUCaGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 199 | 0.69 | 0.925837 |
Target: 5'- uCUCUACGcgcCGGUGcccccGCGA-CGGUCCCCg -3' miRNA: 3'- -GAGAUGUa--GUCAC-----CGUUgGUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 16206 | 0.66 | 0.978293 |
Target: 5'- -gCUGCAUCuG-GGCGcagaccacccagcaGCCAGcgCCCCc -3' miRNA: 3'- gaGAUGUAGuCaCCGU--------------UGGUCa-GGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 12036 | 0.66 | 0.976603 |
Target: 5'- -gCUACGUggCGGgugcGGCcACCAG-CCCCa -3' miRNA: 3'- gaGAUGUA--GUCa---CCGuUGGUCaGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 100785 | 0.66 | 0.976603 |
Target: 5'- ---aAgAUCAGUGGCAcgccuuagcaaACgGGUUCCCu -3' miRNA: 3'- gagaUgUAGUCACCGU-----------UGgUCAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 121645 | 0.67 | 0.974025 |
Target: 5'- cCUCUACAg-GG-GGCuACCGG-CCCUg -3' miRNA: 3'- -GAGAUGUagUCaCCGuUGGUCaGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 70607 | 0.67 | 0.96164 |
Target: 5'- aCUCUGaucgCGGUgcaGGCcuGCCAGcCCCCg -3' miRNA: 3'- -GAGAUgua-GUCA---CCGu-UGGUCaGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 115399 | 0.68 | 0.945662 |
Target: 5'- gCUCgcgUGCAggaggCAGcUGGCGGCCGGgCCUCg -3' miRNA: 3'- -GAG---AUGUa----GUC-ACCGUUGGUCaGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 51806 | 0.68 | 0.93624 |
Target: 5'- -aCUugAUCAGgagGGCGGCC--UCCUCg -3' miRNA: 3'- gaGAugUAGUCa--CCGUUGGucAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 35144 | 0.66 | 0.985066 |
Target: 5'- -cCUGCcUCAccGUGGCAcACUAaUCCCCu -3' miRNA: 3'- gaGAUGuAGU--CACCGU-UGGUcAGGGG- -5' |
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28812 | 3' | -52.8 | NC_006146.1 | + | 139204 | 0.73 | 0.743067 |
Target: 5'- -------gCGGUGGCAGCCgcGGUCCCCc -3' miRNA: 3'- gagauguaGUCACCGUUGG--UCAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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