miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 39053 0.73 0.386582
Target:  5'- gGCAggGGCCCUgugaAugGUCGCCGGCCuCCGGu -3'
miRNA:   3'- -UGU--UCGGGA----UugCGGUGGUCGG-GGUU- -5'
28812 5' -58.6 NC_006146.1 + 17081 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 14003 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 29393 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 20159 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 23237 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 26315 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 13976 0.73 0.403467
Target:  5'- -gGAGCCCgucAGCGCCGCCacccaGGCCUCGg -3'
miRNA:   3'- ugUUCGGGa--UUGCGGUGG-----UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 800 0.72 0.42965
Target:  5'- cGCcGGCCCccccuGCGgCGCCGGCCCCu- -3'
miRNA:   3'- -UGuUCGGGau---UGCgGUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 103311 0.72 0.438598
Target:  5'- -gAGGCCa-AACGCCACgGGCCCCc- -3'
miRNA:   3'- ugUUCGGgaUUGCGGUGgUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 115235 0.72 0.438598
Target:  5'- uGCuGGCCUUcAACGCCGCCuGGCUCCGg -3'
miRNA:   3'- -UGuUCGGGA-UUGCGGUGG-UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 136869 0.72 0.447651
Target:  5'- cAUAGGCCCcgggaccACGcCCGCCuGCCCCGAc -3'
miRNA:   3'- -UGUUCGGGau-----UGC-GGUGGuCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 302 0.72 0.447651
Target:  5'- gGCGGGCCCggcGCGCuCGCCAcGCCCa-- -3'
miRNA:   3'- -UGUUCGGGau-UGCG-GUGGU-CGGGguu -5'
28812 5' -58.6 NC_006146.1 + 44657 0.72 0.456807
Target:  5'- cCAAGCCCgGGCGCC-UgGGUCCCAAa -3'
miRNA:   3'- uGUUCGGGaUUGCGGuGgUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 126494 0.71 0.466062
Target:  5'- -gGAGCCCcucgaggaaGGCGCCGugcCCGGCCCCAc -3'
miRNA:   3'- ugUUCGGGa--------UUGCGGU---GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 31843 0.71 0.475414
Target:  5'- -aGGGCCCguaugGugGCCGCCAGUuaCCCGu -3'
miRNA:   3'- ugUUCGGGa----UugCGGUGGUCG--GGGUu -5'
28812 5' -58.6 NC_006146.1 + 128194 0.71 0.494391
Target:  5'- uGCcAGCCCgagcgGGCGCUggggggcucuGCCAGCCUCAGg -3'
miRNA:   3'- -UGuUCGGGa----UUGCGG----------UGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 98335 0.71 0.494391
Target:  5'- gGCAAGCCCcAGCaCCacGCCGGCgCCCAu -3'
miRNA:   3'- -UGUUCGGGaUUGcGG--UGGUCG-GGGUu -5'
28812 5' -58.6 NC_006146.1 + 1320 0.71 0.504009
Target:  5'- uCAGGCCCcacccGACGCgCGCUcgGGCCCCGGg -3'
miRNA:   3'- uGUUCGGGa----UUGCG-GUGG--UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 2252 0.71 0.504009
Target:  5'- uCAGGCCCcacccGACGCgCGCUcgGGCCCCGGg -3'
miRNA:   3'- uGUUCGGGa----UUGCG-GUGG--UCGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.