miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 99123 1.05 0.002426
Target:  5'- cACAAGCCCUAACGCCACCAGCCCCAAg -3'
miRNA:   3'- -UGUUCGGGAUUGCGGUGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 98978 0.86 0.054476
Target:  5'- ----cCCCUAACGCCACCAGCCCCAc -3'
miRNA:   3'- uguucGGGAUUGCGGUGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 99014 0.86 0.054476
Target:  5'- ----cCCCUAACGCCACCAGCCCCAc -3'
miRNA:   3'- uguucGGGAUUGCGGUGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 98937 0.82 0.100664
Target:  5'- gACAucCCCUAAUGUCACCAGCCCCAc -3'
miRNA:   3'- -UGUucGGGAUUGCGGUGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 41626 0.77 0.221942
Target:  5'- -uGGGCCCgGGCGCagACCAGCCCCAc -3'
miRNA:   3'- ugUUCGGGaUUGCGg-UGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 46132 0.76 0.250489
Target:  5'- cCGGGCCCUGGCcguGCUcugauuguggACCAGCCCCAGg -3'
miRNA:   3'- uGUUCGGGAUUG---CGG----------UGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 130147 0.75 0.275454
Target:  5'- gGCAGGUCCacgucCGUgGCCAGCCCCAAg -3'
miRNA:   3'- -UGUUCGGGauu--GCGgUGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 151950 0.75 0.309408
Target:  5'- -gGGGCCgCUGGCGCCACCAcauGCCCUu- -3'
miRNA:   3'- ugUUCGG-GAUUGCGGUGGU---CGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 122904 0.74 0.338801
Target:  5'- cCAAGCCUcc-CGCCACCAGCCaCCu- -3'
miRNA:   3'- uGUUCGGGauuGCGGUGGUCGG-GGuu -5'
28812 5' -58.6 NC_006146.1 + 12043 0.74 0.346459
Target:  5'- gGCGGGUgCg---GCCACCAGCCCCAu -3'
miRNA:   3'- -UGUUCGgGauugCGGUGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 131369 0.74 0.354241
Target:  5'- --cAGCCCUuGCGCCGCCucCCCCAGc -3'
miRNA:   3'- uguUCGGGAuUGCGGUGGucGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 68426 0.73 0.362144
Target:  5'- cGCGAGaCCCUGaACGCCgcgGCCGGCUCCu- -3'
miRNA:   3'- -UGUUC-GGGAU-UGCGG---UGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 12766 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 22000 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 28156 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 15845 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 25078 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 18923 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 58390 0.73 0.378316
Target:  5'- cCAGGCCCU----CCACCGGCCCCu- -3'
miRNA:   3'- uGUUCGGGAuugcGGUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 114022 0.73 0.386582
Target:  5'- -aAAGUCCccgaacacgGGCgGCCGCCAGCCCCAGc -3'
miRNA:   3'- ugUUCGGGa--------UUG-CGGUGGUCGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.