miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 41626 0.77 0.221942
Target:  5'- -uGGGCCCgGGCGCagACCAGCCCCAc -3'
miRNA:   3'- ugUUCGGGaUUGCGg-UGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 29393 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 44657 0.72 0.456807
Target:  5'- cCAAGCCCgGGCGCC-UgGGUCCCAAa -3'
miRNA:   3'- uGUUCGGGaUUGCGGuGgUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 159020 0.66 0.800731
Target:  5'- cCGGGCCCcguUggUGCCagucaacgucggGCCcGCCCCAAg -3'
miRNA:   3'- uGUUCGGG---AuuGCGG------------UGGuCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 12766 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 15845 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 22000 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 25078 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 39053 0.73 0.386582
Target:  5'- gGCAggGGCCCUgugaAugGUCGCCGGCCuCCGGu -3'
miRNA:   3'- -UGU--UCGGGA----UugCGGUGGUCGG-GGUU- -5'
28812 5' -58.6 NC_006146.1 + 26315 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 17081 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 58390 0.73 0.378316
Target:  5'- cCAGGCCCU----CCACCGGCCCCu- -3'
miRNA:   3'- uGUUCGGGAuugcGGUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 46132 0.76 0.250489
Target:  5'- cCGGGCCCUGGCcguGCUcugauuguggACCAGCCCCAGg -3'
miRNA:   3'- uGUUCGGGAUUG---CGG----------UGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 20159 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 151950 0.75 0.309408
Target:  5'- -gGGGCCgCUGGCGCCACCAcauGCCCUu- -3'
miRNA:   3'- ugUUCGG-GAUUGCGGUGGU---CGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 28156 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 23237 0.73 0.394966
Target:  5'- cCAGGCCCguccacuCGCCccgaguCCAGCCCCGu -3'
miRNA:   3'- uGUUCGGGauu----GCGGu-----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 103311 0.72 0.438598
Target:  5'- -gAGGCCa-AACGCCACgGGCCCCc- -3'
miRNA:   3'- ugUUCGGgaUUGCGGUGgUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 131369 0.74 0.354241
Target:  5'- --cAGCCCUuGCGCCGCCucCCCCAGc -3'
miRNA:   3'- uguUCGGGAuUGCGGUGGucGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 18923 0.73 0.37017
Target:  5'- -gGAGCCggcgGGCGCCACCAGgUCCCAAc -3'
miRNA:   3'- ugUUCGGga--UUGCGGUGGUC-GGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.