miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 302 0.72 0.447651
Target:  5'- gGCGGGCCCggcGCGCuCGCCAcGCCCa-- -3'
miRNA:   3'- -UGUUCGGGau-UGCG-GUGGU-CGGGguu -5'
28812 5' -58.6 NC_006146.1 + 594 0.67 0.695317
Target:  5'- gGCGcGGCCC-GGCGCCAgcCCuGCCCCc- -3'
miRNA:   3'- -UGU-UCGGGaUUGCGGU--GGuCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 702 0.7 0.543231
Target:  5'- cGCuGGCCCc--CGCCAggccCCGGCCCCGc -3'
miRNA:   3'- -UGuUCGGGauuGCGGU----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 800 0.72 0.42965
Target:  5'- cGCcGGCCCccccuGCGgCGCCGGCCCCu- -3'
miRNA:   3'- -UGuUCGGGau---UGCgGUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 921 0.67 0.695317
Target:  5'- cCGGGaCCCcgGGCGCgCGCCGGCCUCc- -3'
miRNA:   3'- uGUUC-GGGa-UUGCG-GUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 1233 0.67 0.725208
Target:  5'- gGCGGGCCaCgcGCGcCCGCCAcGCCCa-- -3'
miRNA:   3'- -UGUUCGG-GauUGC-GGUGGU-CGGGguu -5'
28812 5' -58.6 NC_006146.1 + 1320 0.71 0.504009
Target:  5'- uCAGGCCCcacccGACGCgCGCUcgGGCCCCGGg -3'
miRNA:   3'- uGUUCGGGa----UUGCG-GUGG--UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 1525 0.67 0.695317
Target:  5'- gGCGcGGCCC-GGCGCCAgcCCuGCCCCc- -3'
miRNA:   3'- -UGU-UCGGGaUUGCGGU--GGuCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 1633 0.7 0.543231
Target:  5'- cGCuGGCCCc--CGCCAggccCCGGCCCCGc -3'
miRNA:   3'- -UGuUCGGGauuGCGGU----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 1708 0.67 0.715312
Target:  5'- cCGAGCgUgacgacggGACGCCccGCCGGCCCCc- -3'
miRNA:   3'- uGUUCGgGa-------UUGCGG--UGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 1853 0.67 0.695317
Target:  5'- cCGGGaCCCcgGGCGCgCGCCGGCCUCc- -3'
miRNA:   3'- uGUUC-GGGa-UUGCG-GUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 2165 0.67 0.725208
Target:  5'- gGCGGGCCaCgcGCGcCCGCCAcGCCCa-- -3'
miRNA:   3'- -UGUUCGG-GauUGC-GGUGGU-CGGGguu -5'
28812 5' -58.6 NC_006146.1 + 2252 0.71 0.504009
Target:  5'- uCAGGCCCcacccGACGCgCGCUcgGGCCCCGGg -3'
miRNA:   3'- uGUUCGGGa----UUGCG-GUGG--UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 2457 0.67 0.695317
Target:  5'- gGCGcGGCCC-GGCGCCAgcCCuGCCCCc- -3'
miRNA:   3'- -UGU-UCGGGaUUGCGGU--GGuCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 2565 0.7 0.543231
Target:  5'- cGCuGGCCCc--CGCCAggccCCGGCCCCGc -3'
miRNA:   3'- -UGuUCGGGauuGCGGU----GGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 2640 0.67 0.715312
Target:  5'- cCGAGCgUgacgacggGACGCCccGCCGGCCCCc- -3'
miRNA:   3'- uGUUCGgGa-------UUGCGG--UGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 2785 0.67 0.695317
Target:  5'- cCGGGaCCCcgGGCGCgCGCCGGCCUCc- -3'
miRNA:   3'- uGUUC-GGGa-UUGCG-GUGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 3097 0.67 0.725208
Target:  5'- gGCGGGCCaCgcGCGcCCGCCAcGCCCa-- -3'
miRNA:   3'- -UGUUCGG-GauUGC-GGUGGU-CGGGguu -5'
28812 5' -58.6 NC_006146.1 + 3138 0.69 0.603726
Target:  5'- uCGAGCCaugcGCGCCcacCCGGCCCCu- -3'
miRNA:   3'- uGUUCGGgau-UGCGGu--GGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 3184 0.71 0.504009
Target:  5'- uCAGGCCCcacccGACGCgCGCUcgGGCCCCGGg -3'
miRNA:   3'- uGUUCGGGa----UUGCG-GUGG--UCGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.