miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 119301 0.66 0.800731
Target:  5'- gGCu-GUCCcGACGCaACCGGCCUCAGu -3'
miRNA:   3'- -UGuuCGGGaUUGCGgUGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 104333 0.66 0.763901
Target:  5'- --cGGCCUgccuGCGCCGCCuGCgCCAc -3'
miRNA:   3'- uguUCGGGau--UGCGGUGGuCGgGGUu -5'
28812 5' -58.6 NC_006146.1 + 129443 0.66 0.762954
Target:  5'- -gAAGCUC--ACGUCcagacagGCCAGCCCCAGa -3'
miRNA:   3'- ugUUCGGGauUGCGG-------UGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 110792 0.66 0.75438
Target:  5'- --cGGCCCcuugcacagAACGCCaACCGGCCCg-- -3'
miRNA:   3'- uguUCGGGa--------UUGCGG-UGGUCGGGguu -5'
28812 5' -58.6 NC_006146.1 + 149685 0.66 0.75438
Target:  5'- uGCAGGCCgUuuuC-CUACCAGCUCCAc -3'
miRNA:   3'- -UGUUCGGgAuu-GcGGUGGUCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 33247 0.66 0.75438
Target:  5'- gGCGGGUCCgccGgGCCGCU-GCCCCGc -3'
miRNA:   3'- -UGUUCGGGau-UgCGGUGGuCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 69017 0.66 0.75438
Target:  5'- cACGAGUCUgagauuccCGCCACCGuccucGCCCCGc -3'
miRNA:   3'- -UGUUCGGGauu-----GCGGUGGU-----CGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 94037 0.66 0.763901
Target:  5'- gGCAcGGCCCcgAGCGCCGCCGcGUauCCCu- -3'
miRNA:   3'- -UGU-UCGGGa-UUGCGGUGGU-CG--GGGuu -5'
28812 5' -58.6 NC_006146.1 + 134177 0.66 0.763901
Target:  5'- -gGGGCCUgcACGCCGagguuauuucCCAGCCCUu- -3'
miRNA:   3'- ugUUCGGGauUGCGGU----------GGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 117556 0.66 0.773306
Target:  5'- cCAAGaCCUcACGCCGCCccgcGGCCgCCGGg -3'
miRNA:   3'- uGUUCgGGAuUGCGGUGG----UCGG-GGUU- -5'
28812 5' -58.6 NC_006146.1 + 85236 0.66 0.779815
Target:  5'- uCAGGCCCUuucauccACcaggguccccguggGCCaACCAGCCCCu- -3'
miRNA:   3'- uGUUCGGGAu------UG--------------CGG-UGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 106462 0.66 0.779815
Target:  5'- aAC-AGCCCcucUGucuccuggcagcguACGCCGCCguGGCCCCGg -3'
miRNA:   3'- -UGuUCGGG---AU--------------UGCGGUGG--UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 128006 0.66 0.800731
Target:  5'- gACAgacGGCCCUAGCGUC---GGCCCgCAAa -3'
miRNA:   3'- -UGU---UCGGGAUUGCGGuggUCGGG-GUU- -5'
28812 5' -58.6 NC_006146.1 + 9266 0.66 0.800731
Target:  5'- cAC-AGCaaaCUAAgGCCACCAGCUCa-- -3'
miRNA:   3'- -UGuUCGg--GAUUgCGGUGGUCGGGguu -5'
28812 5' -58.6 NC_006146.1 + 75788 0.66 0.798046
Target:  5'- -gGGGCUCUAcucgggcgucucggGCGCCGCCuucgaGGCCCUg- -3'
miRNA:   3'- ugUUCGGGAU--------------UGCGGUGG-----UCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 80359 0.66 0.79173
Target:  5'- cCGGGCCCU-GCuCCACC-GCUCCGGg -3'
miRNA:   3'- uGUUCGGGAuUGcGGUGGuCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 107651 0.66 0.782585
Target:  5'- -aGAGCCCcccgGAgGCCAUU-GCCCCAu -3'
miRNA:   3'- ugUUCGGGa---UUgCGGUGGuCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 102731 0.66 0.782585
Target:  5'- ---cGUCCUGACGCUgcGCCuGCCCgGGg -3'
miRNA:   3'- uguuCGGGAUUGCGG--UGGuCGGGgUU- -5'
28812 5' -58.6 NC_006146.1 + 51900 0.66 0.782585
Target:  5'- uUAAGCCCggUGACGCUuccuccccCCAGCUCCu- -3'
miRNA:   3'- uGUUCGGG--AUUGCGGu-------GGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 41776 0.66 0.782585
Target:  5'- -gAGGCCCU-GCGCC-CgGGCgCCCGc -3'
miRNA:   3'- ugUUCGGGAuUGCGGuGgUCG-GGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.