miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 3' -53.5 NC_006146.1 + 89205 0.75 0.62517
Target:  5'- gGCUCCUGGGGUuUugGUuCCUCAuCGu -3'
miRNA:   3'- -CGAGGACCCUAuGugCGuGGAGUuGC- -5'
28827 3' -53.5 NC_006146.1 + 9771 0.68 0.92112
Target:  5'- -aUCCUGG--UGCAUGCGCC-CAAUGa -3'
miRNA:   3'- cgAGGACCcuAUGUGCGUGGaGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 71528 0.7 0.87609
Target:  5'- cGCUCCUGGGccucaACGCGCgGCCcgGGCGc -3'
miRNA:   3'- -CGAGGACCCua---UGUGCG-UGGagUUGC- -5'
28827 3' -53.5 NC_006146.1 + 108721 0.7 0.87609
Target:  5'- gGCUCCgUGGGcGUGCugGUguccGCCUCcuCGg -3'
miRNA:   3'- -CGAGG-ACCC-UAUGugCG----UGGAGuuGC- -5'
28827 3' -53.5 NC_006146.1 + 46390 0.7 0.868744
Target:  5'- uGCUgUgugagagGGGGUugGCuaGCCUCAGCGa -3'
miRNA:   3'- -CGAgGa------CCCUAugUGcgUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 134721 0.7 0.853412
Target:  5'- -gUCCUGcaGGAUGCAUGCACCaggcCAGCc -3'
miRNA:   3'- cgAGGAC--CCUAUGUGCGUGGa---GUUGc -5'
28827 3' -53.5 NC_006146.1 + 76524 0.74 0.696844
Target:  5'- gGCUCCagaaGAacUACGCGCGCCUCGGCa -3'
miRNA:   3'- -CGAGGacc-CU--AUGUGCGUGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 111949 0.74 0.676506
Target:  5'- cCUCgaGGGcUGCA-GCACCUCAGCGc -3'
miRNA:   3'- cGAGgaCCCuAUGUgCGUGGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 15572 0.74 0.666278
Target:  5'- gGUcCCUGGGAggACAgGCGCgUCGGCGa -3'
miRNA:   3'- -CGaGGACCCUa-UGUgCGUGgAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 113617 0.68 0.92112
Target:  5'- cCUCCUGGGggAC-CGuCAgCUUGACGg -3'
miRNA:   3'- cGAGGACCCuaUGuGC-GUgGAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 167844 0.68 0.936844
Target:  5'- --gCCUGGGcca-ACGCGCuCUCGGCGu -3'
miRNA:   3'- cgaGGACCCuaugUGCGUG-GAGUUGC- -5'
28827 3' -53.5 NC_006146.1 + 39687 0.67 0.950408
Target:  5'- gGCUCCUGGGccUGCA-GCGCCgCucCGg -3'
miRNA:   3'- -CGAGGACCCu-AUGUgCGUGGaGuuGC- -5'
28827 3' -53.5 NC_006146.1 + 140537 0.66 0.979012
Target:  5'- aGC-CCUGGGAgggACG-GCACCcCAAUu -3'
miRNA:   3'- -CGaGGACCCUa--UGUgCGUGGaGUUGc -5'
28827 3' -53.5 NC_006146.1 + 91773 0.66 0.974102
Target:  5'- gGUgCCUGGGGUgccguGCugGCACC-CG-CGg -3'
miRNA:   3'- -CGaGGACCCUA-----UGugCGUGGaGUuGC- -5'
28827 3' -53.5 NC_006146.1 + 56568 0.66 0.968407
Target:  5'- aCUCCagggUGGuGAUGCAgGCGCCUgGggauGCGg -3'
miRNA:   3'- cGAGG----ACC-CUAUGUgCGUGGAgU----UGC- -5'
28827 3' -53.5 NC_006146.1 + 113644 0.67 0.965248
Target:  5'- uGCUCCggGGGAUGgccuugcugacCACGgGCC-CGugGa -3'
miRNA:   3'- -CGAGGa-CCCUAU-----------GUGCgUGGaGUugC- -5'
28827 3' -53.5 NC_006146.1 + 106286 0.67 0.961874
Target:  5'- cCUCCUGGccUGCGCcaugaACCUCAGCa -3'
miRNA:   3'- cGAGGACCcuAUGUGcg---UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 39803 0.67 0.961524
Target:  5'- gGCUUCUGGGAcgGCGgcCGUugacggcccggcgGCCUCGGCc -3'
miRNA:   3'- -CGAGGACCCUa-UGU--GCG-------------UGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 85817 0.67 0.958279
Target:  5'- -aUCaCUGGGGaGCugGUGCCUUGGCu -3'
miRNA:   3'- cgAG-GACCCUaUGugCGUGGAGUUGc -5'
28827 3' -53.5 NC_006146.1 + 162633 0.67 0.954458
Target:  5'- gGCUCCcagagagaacgGGGGUGCAUGCccCCUCGuagGCa -3'
miRNA:   3'- -CGAGGa----------CCCUAUGUGCGu-GGAGU---UGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.