miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 5' -63.3 NC_006146.1 + 77284 1.1 0.00063
Target:  5'- gGCCUCCGGGGAGGACAGCAGCCCCAGg -3'
miRNA:   3'- -CGGAGGCCCCUCCUGUCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 102744 0.83 0.050122
Target:  5'- cGCCUgcCCGGGGAGGA-GGCAGCCCCu- -3'
miRNA:   3'- -CGGA--GGCCCCUCCUgUCGUCGGGGuc -5'
28827 5' -63.3 NC_006146.1 + 146672 0.79 0.097013
Target:  5'- cCCUCCcGGGcGGugGGCGGCCCCGGc -3'
miRNA:   3'- cGGAGGcCCCuCCugUCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 99206 0.78 0.115494
Target:  5'- cGCCUCCaGGGAGG-CcGCGGCCUCGGc -3'
miRNA:   3'- -CGGAGGcCCCUCCuGuCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 40425 0.78 0.127484
Target:  5'- aGCCacCCGGGGcGG-CAGCGGCCCCGu -3'
miRNA:   3'- -CGGa-GGCCCCuCCuGUCGUCGGGGUc -5'
28827 5' -63.3 NC_006146.1 + 38458 0.77 0.130656
Target:  5'- uGCCUCCGGGGu-GACGGguGCCauCCGGg -3'
miRNA:   3'- -CGGAGGCCCCucCUGUCguCGG--GGUC- -5'
28827 5' -63.3 NC_006146.1 + 113696 0.75 0.174787
Target:  5'- gGCCUCCGGcccGGGGACGGCGGCggcagCCGGg -3'
miRNA:   3'- -CGGAGGCCc--CUCCUGUCGUCGg----GGUC- -5'
28827 5' -63.3 NC_006146.1 + 56842 0.75 0.179011
Target:  5'- gGCCUCUGGcGGcgGGGGCGGCAGCUuuGGc -3'
miRNA:   3'- -CGGAGGCC-CC--UCCUGUCGUCGGggUC- -5'
28827 5' -63.3 NC_006146.1 + 84951 0.75 0.185076
Target:  5'- cGCCUCgcuUGGGGGGGGCaaAGUcccgcaggccauccaGGCCCCAGg -3'
miRNA:   3'- -CGGAG---GCCCCUCCUG--UCG---------------UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 118053 0.75 0.192229
Target:  5'- aGCCcCCGGGcGGGGGCGGCGGCggCUCGGc -3'
miRNA:   3'- -CGGaGGCCC-CUCCUGUCGUCG--GGGUC- -5'
28827 5' -63.3 NC_006146.1 + 47755 0.74 0.231715
Target:  5'- gGCC-CUGGGGAcGGAgAGCGGCCUCu- -3'
miRNA:   3'- -CGGaGGCCCCU-CCUgUCGUCGGGGuc -5'
28827 5' -63.3 NC_006146.1 + 49247 0.73 0.237106
Target:  5'- aCCUCCGGGuccAGGGcCGGUAGCCCCc- -3'
miRNA:   3'- cGGAGGCCCc--UCCU-GUCGUCGGGGuc -5'
28827 5' -63.3 NC_006146.1 + 114209 0.73 0.242601
Target:  5'- cGCCgggCCGGaGGGGG-UAGCAGCCCg-- -3'
miRNA:   3'- -CGGa--GGCC-CCUCCuGUCGUCGGGguc -5'
28827 5' -63.3 NC_006146.1 + 14816 0.73 0.248201
Target:  5'- gGCCgggCCGGaGGAGGGCA-CGGUCUCGGg -3'
miRNA:   3'- -CGGa--GGCC-CCUCCUGUcGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 83620 0.73 0.259723
Target:  5'- uCCUUgGGGGAGuaguagcuCAGCAGCUCCAGa -3'
miRNA:   3'- cGGAGgCCCCUCcu------GUCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 33202 0.73 0.265049
Target:  5'- gGCCUCCGGGuGcuccuggugcuccGGGGCAGCcggguGGCCgCCGGc -3'
miRNA:   3'- -CGGAGGCCC-C-------------UCCUGUCG-----UCGG-GGUC- -5'
28827 5' -63.3 NC_006146.1 + 19410 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 16332 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 13254 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 22488 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.