miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 5' -63.3 NC_006146.1 + 571 0.68 0.502038
Target:  5'- gGCCUCCcaggagaGGGGccgGGGGC-GCGGCCCg-- -3'
miRNA:   3'- -CGGAGG-------CCCC---UCCUGuCGUCGGGguc -5'
28827 5' -63.3 NC_006146.1 + 1502 0.68 0.502038
Target:  5'- gGCCUCCcaggagaGGGGccgGGGGC-GCGGCCCg-- -3'
miRNA:   3'- -CGGAGG-------CCCC---UCCUGuCGUCGGGguc -5'
28827 5' -63.3 NC_006146.1 + 2434 0.68 0.502038
Target:  5'- gGCCUCCcaggagaGGGGccgGGGGC-GCGGCCCg-- -3'
miRNA:   3'- -CGGAGG-------CCCC---UCCUGuCGUCGGGguc -5'
28827 5' -63.3 NC_006146.1 + 3366 0.68 0.502038
Target:  5'- gGCCUCCcaggagaGGGGccgGGGGC-GCGGCCCg-- -3'
miRNA:   3'- -CGGAGG-------CCCC---UCCUGuCGUCGGGguc -5'
28827 5' -63.3 NC_006146.1 + 4517 0.69 0.449432
Target:  5'- gGCCagCGGGGGGuGACcaucucggugccGGCAGCCgCCGa -3'
miRNA:   3'- -CGGagGCCCCUC-CUG------------UCGUCGG-GGUc -5'
28827 5' -63.3 NC_006146.1 + 4951 0.7 0.380923
Target:  5'- uGCC-CCGGGGAccagGGGCcacgagagccuccuGGCGGCCUCAc -3'
miRNA:   3'- -CGGaGGCCCCU----CCUG--------------UCGUCGGGGUc -5'
28827 5' -63.3 NC_006146.1 + 7292 0.68 0.512149
Target:  5'- cGCCuUCCGGGGAGaGGCcucaacugGGCAuuGCCCa-- -3'
miRNA:   3'- -CGG-AGGCCCCUC-CUG--------UCGU--CGGGguc -5'
28827 5' -63.3 NC_006146.1 + 9134 0.66 0.613888
Target:  5'- gGUCUCCcacGGGGcguugccucuuucgGGGACGGCgGGCuCCCAc -3'
miRNA:   3'- -CGGAGG---CCCC--------------UCCUGUCG-UCG-GGGUc -5'
28827 5' -63.3 NC_006146.1 + 13108 0.67 0.520484
Target:  5'- cGCCaggCGGGGuccggccucuccuGGGGCAGCAGgcucaacaCCCCGGa -3'
miRNA:   3'- -CGGag-GCCCC-------------UCCUGUCGUC--------GGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 13254 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 13425 0.68 0.473145
Target:  5'- uGCCUccCCGGGucccaggccagccgGAGGGacccCGGCAGCCCgGGu -3'
miRNA:   3'- -CGGA--GGCCC--------------CUCCU----GUCGUCGGGgUC- -5'
28827 5' -63.3 NC_006146.1 + 13712 0.69 0.435693
Target:  5'- gGCCUcucggguccaccaggCCGGccGGAGGGacccCGGCAGCCCgGGa -3'
miRNA:   3'- -CGGA---------------GGCC--CCUCCU----GUCGUCGGGgUC- -5'
28827 5' -63.3 NC_006146.1 + 14199 0.66 0.626487
Target:  5'- aGCCUggaCGGGGAGG-CGGUGGCgCgCAa -3'
miRNA:   3'- -CGGAg--GCCCCUCCuGUCGUCG-GgGUc -5'
28827 5' -63.3 NC_006146.1 + 14816 0.73 0.248201
Target:  5'- gGCCgggCCGGaGGAGGGCA-CGGUCUCGGg -3'
miRNA:   3'- -CGGa--GGCC-CCUCCUGUcGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 16186 0.67 0.520484
Target:  5'- cGCCaggCGGGGuccggccucuccuGGGGCAGCAGgcucaacaCCCCGGa -3'
miRNA:   3'- -CGGag-GCCCC-------------UCCUGUCGUC--------GGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 16332 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 16503 0.68 0.473145
Target:  5'- uGCCUccCCGGGucccaggccagccgGAGGGacccCGGCAGCCCgGGu -3'
miRNA:   3'- -CGGA--GGCCC--------------CUCCU----GUCGUCGGGgUC- -5'
28827 5' -63.3 NC_006146.1 + 16790 0.69 0.435693
Target:  5'- gGCCUcucggguccaccaggCCGGccGGAGGGacccCGGCAGCCCgGGa -3'
miRNA:   3'- -CGGA---------------GGCC--CCUCCU----GUCGUCGGGgUC- -5'
28827 5' -63.3 NC_006146.1 + 18859 0.69 0.449432
Target:  5'- cGCUgCCGGGGugguGGACGuGCgggGGCCUCAGc -3'
miRNA:   3'- -CGGaGGCCCCu---CCUGU-CG---UCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 19264 0.67 0.520484
Target:  5'- cGCCaggCGGGGuccggccucuccuGGGGCAGCAGgcucaacaCCCCGGa -3'
miRNA:   3'- -CGGag-GCCCC-------------UCCUGUCGUC--------GGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.