miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28827 5' -63.3 NC_006146.1 + 146672 0.79 0.097013
Target:  5'- cCCUCCcGGGcGGugGGCGGCCCCGGc -3'
miRNA:   3'- cGGAGGcCCCuCCugUCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 169966 0.72 0.30349
Target:  5'- gGCCUUCGGGacggGAGGcCGGCGcGCgCCCGGg -3'
miRNA:   3'- -CGGAGGCCC----CUCCuGUCGU-CG-GGGUC- -5'
28827 5' -63.3 NC_006146.1 + 156831 0.71 0.316995
Target:  5'- aCCUCCagacccGGGAGGACcGCAGCCagCCGGc -3'
miRNA:   3'- cGGAGGc-----CCCUCCUGuCGUCGG--GGUC- -5'
28827 5' -63.3 NC_006146.1 + 54210 0.66 0.633275
Target:  5'- gGUCUCCgcaucguacaggauGGGGcGGGAgCagagccucugGGCGGCCCCGGu -3'
miRNA:   3'- -CGGAGG--------------CCCC-UCCU-G----------UCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 56842 0.75 0.179011
Target:  5'- gGCCUCUGGcGGcgGGGGCGGCAGCUuuGGc -3'
miRNA:   3'- -CGGAGGCC-CC--UCCUGUCGUCGGggUC- -5'
28827 5' -63.3 NC_006146.1 + 49247 0.73 0.237106
Target:  5'- aCCUCCGGGuccAGGGcCGGUAGCCCCc- -3'
miRNA:   3'- cGGAGGCCCc--UCCU-GUCGUCGGGGuc -5'
28827 5' -63.3 NC_006146.1 + 13254 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 16332 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 25566 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 169034 0.72 0.30349
Target:  5'- gGCCUUCGGGacggGAGGcCGGCGcGCgCCCGGg -3'
miRNA:   3'- -CGGAGGCCC----CUCCuGUCGU-CG-GGGUC- -5'
28827 5' -63.3 NC_006146.1 + 51916 0.72 0.296905
Target:  5'- gGCCUCCGaGGcaccGACgGGCGGCCCCGGu -3'
miRNA:   3'- -CGGAGGCcCCuc--CUG-UCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 22488 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 99206 0.78 0.115494
Target:  5'- cGCCUCCaGGGAGG-CcGCGGCCUCGGc -3'
miRNA:   3'- -CGGAGGcCCCUCCuGuCGUCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 167170 0.72 0.30349
Target:  5'- gGCCUUCGGGacggGAGGcCGGCGcGCgCCCGGg -3'
miRNA:   3'- -CGGAGGCCC----CUCCuGUCGU-CG-GGGUC- -5'
28827 5' -63.3 NC_006146.1 + 38458 0.77 0.130656
Target:  5'- uGCCUCCGGGGu-GACGGguGCCauCCGGg -3'
miRNA:   3'- -CGGAGGCCCCucCUGUCguCGG--GGUC- -5'
28827 5' -63.3 NC_006146.1 + 19410 0.72 0.296253
Target:  5'- uCCUCCaGGGGgaaccagGGGAcCGGC-GCCCCAGa -3'
miRNA:   3'- cGGAGG-CCCC-------UCCU-GUCGuCGGGGUC- -5'
28827 5' -63.3 NC_006146.1 + 168102 0.72 0.30349
Target:  5'- gGCCUUCGGGacggGAGGcCGGCGcGCgCCCGGg -3'
miRNA:   3'- -CGGAGGCCC----CUCCuGUCGU-CG-GGGUC- -5'
28827 5' -63.3 NC_006146.1 + 46173 0.72 0.310186
Target:  5'- -aCUCCGGGuGGGGCcagagAGCGGCCCgAGu -3'
miRNA:   3'- cgGAGGCCCcUCCUG-----UCGUCGGGgUC- -5'
28827 5' -63.3 NC_006146.1 + 113696 0.75 0.174787
Target:  5'- gGCCUCCGGcccGGGGACGGCGGCggcagCCGGg -3'
miRNA:   3'- -CGGAGGCCc--CUCCUGUCGUCGg----GGUC- -5'
28827 5' -63.3 NC_006146.1 + 33202 0.73 0.265049
Target:  5'- gGCCUCCGGGuGcuccuggugcuccGGGGCAGCcggguGGCCgCCGGc -3'
miRNA:   3'- -CGGAGGCCC-C-------------UCCUGUCG-----UCGG-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.