miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 3' -61.4 NC_006146.1 + 75999 1.08 0.001247
Target:  5'- uGGGCUCGCCCACCCAGACAGACGCCUu -3'
miRNA:   3'- -CCCGAGCGGGUGGGUCUGUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 115067 0.8 0.114329
Target:  5'- gGGGCgaacauucCGCCCACCCAGGCcgGGACgGCCUc -3'
miRNA:   3'- -CCCGa-------GCGGGUGGGUCUG--UCUG-CGGA- -5'
28829 3' -61.4 NC_006146.1 + 5592 0.79 0.139478
Target:  5'- gGGGCUCuGCUCACCC-GACGGcCGCCa -3'
miRNA:   3'- -CCCGAG-CGGGUGGGuCUGUCuGCGGa -5'
28829 3' -61.4 NC_006146.1 + 139150 0.78 0.146516
Target:  5'- gGGGCUccCGUCC-CCCGGGgGGGCGCCUg -3'
miRNA:   3'- -CCCGA--GCGGGuGGGUCUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 109585 0.78 0.15768
Target:  5'- cGGCUaGgCCACCCGGGCAGgACGCCg -3'
miRNA:   3'- cCCGAgCgGGUGGGUCUGUC-UGCGGa -5'
28829 3' -61.4 NC_006146.1 + 26504 0.77 0.178002
Target:  5'- uGGGCUUGCCugggaccccacaCACCCAGGCAaGACaGCCa -3'
miRNA:   3'- -CCCGAGCGG------------GUGGGUCUGU-CUG-CGGa -5'
28829 3' -61.4 NC_006146.1 + 128527 0.75 0.231014
Target:  5'- gGGGCgccccUCGCCCACCCuGGCGG-CGCg- -3'
miRNA:   3'- -CCCG-----AGCGGGUGGGuCUGUCuGCGga -5'
28829 3' -61.4 NC_006146.1 + 103570 0.75 0.247051
Target:  5'- uGGGCUCGCCCgggccugggccggGCUCAGcGCGGACGUg- -3'
miRNA:   3'- -CCCGAGCGGG-------------UGGGUC-UGUCUGCGga -5'
28829 3' -61.4 NC_006146.1 + 67737 0.75 0.24762
Target:  5'- cGGUcCGCuCCGCCCAGACGGAggaGCCa -3'
miRNA:   3'- cCCGaGCG-GGUGGGUCUGUCUg--CGGa -5'
28829 3' -61.4 NC_006146.1 + 130179 0.75 0.253372
Target:  5'- cGGGCcCGCCUGCCCGGACcugAGAC-CCg -3'
miRNA:   3'- -CCCGaGCGGGUGGGUCUG---UCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 70732 0.75 0.253372
Target:  5'- gGGGCUuauUGCCC-CCCucGCGGACGCCg -3'
miRNA:   3'- -CCCGA---GCGGGuGGGucUGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 13266 0.75 0.259232
Target:  5'- gGGGCUggUGCCCaagACCCAGGCGGugccCGCCc -3'
miRNA:   3'- -CCCGA--GCGGG---UGGGUCUGUCu---GCGGa -5'
28829 3' -61.4 NC_006146.1 + 68158 0.74 0.290202
Target:  5'- gGGGCU-GCCUccucCCCGGGCAGGCGCa- -3'
miRNA:   3'- -CCCGAgCGGGu---GGGUCUGUCUGCGga -5'
28829 3' -61.4 NC_006146.1 + 115957 0.73 0.310138
Target:  5'- cGGCggUCGCCC-CgCGGGCAGACGUCg -3'
miRNA:   3'- cCCG--AGCGGGuGgGUCUGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 16151 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 25385 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 13073 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 19229 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 28463 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 22307 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.