miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 3' -61.4 NC_006146.1 + 5592 0.79 0.139478
Target:  5'- gGGGCUCuGCUCACCC-GACGGcCGCCa -3'
miRNA:   3'- -CCCGAG-CGGGUGGGuCUGUCuGCGGa -5'
28829 3' -61.4 NC_006146.1 + 67501 0.71 0.416598
Target:  5'- gGGGagcacgaCGCCC-CCCAcuGGCAGGCGCCc -3'
miRNA:   3'- -CCCga-----GCGGGuGGGU--CUGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 57390 0.7 0.459669
Target:  5'- uGGGCUgGCCCcgcgaccguGCCCGgccGACGcACGCCUc -3'
miRNA:   3'- -CCCGAgCGGG---------UGGGU---CUGUcUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 55712 0.66 0.726616
Target:  5'- gGGGCUCuGCCCGCCgCuGGCcuccgcguacACGCCc -3'
miRNA:   3'- -CCCGAG-CGGGUGG-GuCUGuc--------UGCGGa -5'
28829 3' -61.4 NC_006146.1 + 67737 0.75 0.24762
Target:  5'- cGGUcCGCuCCGCCCAGACGGAggaGCCa -3'
miRNA:   3'- cCCGaGCG-GGUGGGUCUGUCUg--CGGa -5'
28829 3' -61.4 NC_006146.1 + 68158 0.74 0.290202
Target:  5'- gGGGCU-GCCUccucCCCGGGCAGGCGCa- -3'
miRNA:   3'- -CCCGAgCGGGu---GGGUCUGUCUGCGga -5'
28829 3' -61.4 NC_006146.1 + 16151 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 19229 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 28463 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 129486 0.72 0.383972
Target:  5'- -aGC-CGCCCACCCAGcGCGGcCGUCUa -3'
miRNA:   3'- ccCGaGCGGGUGGGUC-UGUCuGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 43330 0.72 0.345643
Target:  5'- cGGcCUCGgCCGCCCAGggccaGCAGGCGCa- -3'
miRNA:   3'- cCC-GAGCgGGUGGGUC-----UGUCUGCGga -5'
28829 3' -61.4 NC_006146.1 + 25385 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 139150 0.78 0.146516
Target:  5'- gGGGCUccCGUCC-CCCGGGgGGGCGCCUg -3'
miRNA:   3'- -CCCGA--GCGGGuGGGUCUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 33404 0.72 0.353085
Target:  5'- gGGGgUgGCCCGCCUGGGCAccgcuGCGCCg -3'
miRNA:   3'- -CCCgAgCGGGUGGGUCUGUc----UGCGGa -5'
28829 3' -61.4 NC_006146.1 + 109585 0.78 0.15768
Target:  5'- cGGCUaGgCCACCCGGGCAGgACGCCg -3'
miRNA:   3'- cCCGAgCgGGUGGGUCUGUC-UGCGGa -5'
28829 3' -61.4 NC_006146.1 + 22307 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 154909 0.72 0.353085
Target:  5'- cGGGCUgaccgCGUCCGCCCuucGCAGGCGCa- -3'
miRNA:   3'- -CCCGA-----GCGGGUGGGuc-UGUCUGCGga -5'
28829 3' -61.4 NC_006146.1 + 45573 0.71 0.433534
Target:  5'- aGGaGCUCGCgCAgCCAGGCGGcCuGCCUc -3'
miRNA:   3'- -CC-CGAGCGgGUgGGUCUGUCuG-CGGA- -5'
28829 3' -61.4 NC_006146.1 + 128527 0.75 0.231014
Target:  5'- gGGGCgccccUCGCCCACCCuGGCGG-CGCg- -3'
miRNA:   3'- -CCCG-----AGCGGGUGGGuCUGUCuGCGga -5'
28829 3' -61.4 NC_006146.1 + 13073 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.