miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 3' -61.4 NC_006146.1 + 1721 0.68 0.590775
Target:  5'- cGGGaCgcccCGCCgGCCCccccuGCAGGCGCCg -3'
miRNA:   3'- -CCC-Ga---GCGGgUGGGuc---UGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 2653 0.68 0.590775
Target:  5'- cGGGaCgcccCGCCgGCCCccccuGCAGGCGCCg -3'
miRNA:   3'- -CCC-Ga---GCGGgUGGGuc---UGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 2766 0.68 0.610283
Target:  5'- -cGCagGCCCaaGCCCGGAUgucagggaAGACGCCa -3'
miRNA:   3'- ccCGagCGGG--UGGGUCUG--------UCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 3568 0.68 0.611261
Target:  5'- aGGGCgaaaugaaauccccCGUCCACUCAGACacggaagagcgcauGGACGUCUc -3'
miRNA:   3'- -CCCGa-------------GCGGGUGGGUCUG--------------UCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 3585 0.68 0.590775
Target:  5'- cGGGaCgcccCGCCgGCCCccccuGCAGGCGCCg -3'
miRNA:   3'- -CCC-Ga---GCGGgUGGGuc---UGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 4380 0.66 0.678674
Target:  5'- -cGCggGCUC-CCCAGGCcGACGCCa -3'
miRNA:   3'- ccCGagCGGGuGGGUCUGuCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 5143 0.66 0.707607
Target:  5'- -cGCUCaCCCGCCCuGcgAGACGCCc -3'
miRNA:   3'- ccCGAGcGGGUGGGuCugUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 5592 0.79 0.139478
Target:  5'- gGGGCUCuGCUCACCC-GACGGcCGCCa -3'
miRNA:   3'- -CCCGAG-CGGGUGGGuCUGUCuGCGGa -5'
28829 3' -61.4 NC_006146.1 + 9881 0.66 0.726616
Target:  5'- cGGCcCGCUCACCCacaaAGGCGguGACgGCCa -3'
miRNA:   3'- cCCGaGCGGGUGGG----UCUGU--CUG-CGGa -5'
28829 3' -61.4 NC_006146.1 + 10530 0.67 0.668949
Target:  5'- uGGGCg-GCCUGCCaaGGGCgcugAGACGCCa -3'
miRNA:   3'- -CCCGagCGGGUGGg-UCUG----UCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 11120 0.69 0.552135
Target:  5'- uGGGCUCgaccccucgGCCUACCUggGGGCGGugGUg- -3'
miRNA:   3'- -CCCGAG---------CGGGUGGG--UCUGUCugCGga -5'
28829 3' -61.4 NC_006146.1 + 12822 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 13073 0.73 0.310138
Target:  5'- cGGC-CGCCCucaguccCCCAGACAGACcCCa -3'
miRNA:   3'- cCCGaGCGGGu------GGGUCUGUCUGcGGa -5'
28829 3' -61.4 NC_006146.1 + 13176 0.66 0.688363
Target:  5'- cGGCcUGCCCggccuGCCCGGccucgcucCGGGCGCCUc -3'
miRNA:   3'- cCCGaGCGGG-----UGGGUCu-------GUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 13266 0.75 0.259232
Target:  5'- gGGGCUggUGCCCaagACCCAGGCGGugccCGCCc -3'
miRNA:   3'- -CCCGA--GCGGG---UGGGUCUGUCu---GCGGa -5'
28829 3' -61.4 NC_006146.1 + 13775 0.66 0.717144
Target:  5'- uGGGCgaggCGUgCGCCUcgcugacucuGGAC-GACGCCg -3'
miRNA:   3'- -CCCGa---GCGgGUGGG----------UCUGuCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 14575 0.72 0.36064
Target:  5'- gGGGCgugaGCCCcauCCCGGACccGCGCCUc -3'
miRNA:   3'- -CCCGag--CGGGu--GGGUCUGucUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 15310 0.66 0.688363
Target:  5'- gGGGCcggaggccaGCCCcgguguGCCCcuGGCGGGCGCCc -3'
miRNA:   3'- -CCCGag-------CGGG------UGGGu-CUGUCUGCGGa -5'
28829 3' -61.4 NC_006146.1 + 15901 0.66 0.69801
Target:  5'- aGGGUUagaGCCCuccggcggccggACCCGaGgAGGCGCCUg -3'
miRNA:   3'- -CCCGAg--CGGG------------UGGGUcUgUCUGCGGA- -5'
28829 3' -61.4 NC_006146.1 + 15975 0.66 0.678674
Target:  5'- gGGGCguucccugCGCCUGCgaaGGGCGGACGCg- -3'
miRNA:   3'- -CCCGa-------GCGGGUGgg-UCUGUCUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.