miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 120012 0.67 0.782237
Target:  5'- -cCAGGcCGCaCCCGCgGCCAg---UCCg -3'
miRNA:   3'- gcGUCC-GUG-GGGCGgCGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 119002 0.66 0.808536
Target:  5'- uCGgAGGC-CCCCGCCGaCGcagCcUCCa -3'
miRNA:   3'- -GCgUCCGuGGGGCGGCgGUaa-GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 117119 0.74 0.398872
Target:  5'- gCGCGGGCcgaggcccucguccgGCgagaccuccgCCCGCCGCCcgUCUUCg -3'
miRNA:   3'- -GCGUCCG---------------UG----------GGGCGGCGGuaAGAAGg -5'
28832 3' -58.9 NC_006146.1 + 115864 0.67 0.775928
Target:  5'- gGCAGGCcccgGCCCCGacccccaucccgcCCGCCcccaucccgcccgggGggCUUCCg -3'
miRNA:   3'- gCGUCCG----UGGGGC-------------GGCGG---------------UaaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 114324 0.66 0.825327
Target:  5'- gGCucGGCGCCCgGCCGCCc--CUg-- -3'
miRNA:   3'- gCGu-CCGUGGGgCGGCGGuaaGAagg -5'
28832 3' -58.9 NC_006146.1 + 114089 0.71 0.539646
Target:  5'- uCGgGGGCcagaaGCCCCGcCCGCCAgaCggCCg -3'
miRNA:   3'- -GCgUCCG-----UGGGGC-GGCGGUaaGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 113509 0.69 0.667871
Target:  5'- --aGGGgGCCaUgGCCGCCAUUCUaCCa -3'
miRNA:   3'- gcgUCCgUGG-GgCGGCGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 106080 0.78 0.222837
Target:  5'- uGCGGGUguuaACCCCcccuguucaccgaaCCGCCAUUCUUCCg -3'
miRNA:   3'- gCGUCCG----UGGGGc-------------GGCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 103108 0.68 0.716818
Target:  5'- gGCGGGgcagaGCCUgGCCGCCGUcacgUCCc -3'
miRNA:   3'- gCGUCCg----UGGGgCGGCGGUAaga-AGG- -5'
28832 3' -58.9 NC_006146.1 + 102276 0.66 0.841456
Target:  5'- uCGUuGGUcuCCCCGCCaGCCcuccCUUCCu -3'
miRNA:   3'- -GCGuCCGu-GGGGCGG-CGGuaa-GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 101629 0.75 0.355869
Target:  5'- gCGguGGCAa-CgGCCGCCGUUCgUCCa -3'
miRNA:   3'- -GCguCCGUggGgCGGCGGUAAGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 100912 0.68 0.726437
Target:  5'- cCGUGGGguCCCCGaCCguGCUGUUCUUggCCa -3'
miRNA:   3'- -GCGUCCguGGGGC-GG--CGGUAAGAA--GG- -5'
28832 3' -58.9 NC_006146.1 + 100149 0.67 0.773206
Target:  5'- gGCGGGUAUUCaCGCCGuCCAcggCUuUCCg -3'
miRNA:   3'- gCGUCCGUGGG-GCGGC-GGUaa-GA-AGG- -5'
28832 3' -58.9 NC_006146.1 + 89122 0.67 0.791141
Target:  5'- aGguGGCACCCCcggagaccggGCgGCCAUgCUcUCa -3'
miRNA:   3'- gCguCCGUGGGG----------CGgCGGUAaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 79801 0.69 0.63811
Target:  5'- aGCGGGCGUCgaGuuGCCAUggCUUCCu -3'
miRNA:   3'- gCGUCCGUGGggCggCGGUAa-GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 77006 0.66 0.808536
Target:  5'- uGCuGGCcccCCCUGCCGCaaa--UUCCg -3'
miRNA:   3'- gCGuCCGu--GGGGCGGCGguaagAAGG- -5'
28832 3' -58.9 NC_006146.1 + 76973 0.75 0.340791
Target:  5'- aGCGGa-GCCCCGCCGCCGccUUCUacgccUCCg -3'
miRNA:   3'- gCGUCcgUGGGGCGGCGGU--AAGA-----AGG- -5'
28832 3' -58.9 NC_006146.1 + 76812 0.66 0.825327
Target:  5'- gGgGGGUcuacgccuucaGCCaCgGCgGCCAUUCUUCUg -3'
miRNA:   3'- gCgUCCG-----------UGG-GgCGgCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 72907 0.66 0.803378
Target:  5'- gCGCAGuaAUCCUugggugagcuggccaGCCGCCccaUCUUCCc -3'
miRNA:   3'- -GCGUCcgUGGGG---------------CGGCGGua-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 72048 1.1 0.001469
Target:  5'- gCGCAGGCACCCCGCCGCCAUUCUUCCc -3'
miRNA:   3'- -GCGUCCGUGGGGCGGCGGUAAGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.