miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 51884 0.69 0.96143
Target:  5'- -aAGGUCaaGGCCCG-UCCCGAGc-- -3'
miRNA:   3'- gaUUCAGagCUGGGCuAGGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 123404 0.69 0.971396
Target:  5'- -cGAGUCUCGACgaUCGGguucCCCGggGGg -3'
miRNA:   3'- gaUUCAGAGCUG--GGCUa---GGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 45555 0.7 0.939414
Target:  5'- gUAGGUCUCcaugcgcacguugGGCCCGGugaauugcUCCCGAAGGc -3'
miRNA:   3'- gAUUCAGAG-------------CUGGGCU--------AGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 126223 0.72 0.905468
Target:  5'- -cAAGUCUCGgaccggggcuguGCCCacauggucaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 4300 0.67 0.99259
Target:  5'- gUGGGggUUCGuuguucccacCCCGGUCCCGAGGAg -3'
miRNA:   3'- gAUUCa-GAGCu---------GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 88980 0.69 0.968306
Target:  5'- -gGAGUucCUCGACCCGAUgUUCGAGGGc -3'
miRNA:   3'- gaUUCA--GAGCUGGGCUA-GGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 10781 0.73 0.869651
Target:  5'- -aGAGUCUCGACCgCGGaggaCCCGGAu-- -3'
miRNA:   3'- gaUUCAGAGCUGG-GCUa---GGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 119854 0.67 0.99259
Target:  5'- gUGGGggUUCGuuguucccacCCCGGUCCCGAGGAg -3'
miRNA:   3'- gAUUCa-GAGCu---------GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 126335 0.73 0.869651
Target:  5'- -aGAGUCUCGACCgCGGaggaCCCGGAu-- -3'
miRNA:   3'- gaUUCAGAGCUGG-GCUa---GGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 14491 0.68 0.979361
Target:  5'- uCUGAGUCUCGucaacACCCG--CUCGAGAGc -3'
miRNA:   3'- -GAUUCAGAGC-----UGGGCuaGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 59883 0.66 0.993595
Target:  5'- -cGGG-CUaccCGACCCcuauGAUCCCGAAAAUu -3'
miRNA:   3'- gaUUCaGA---GCUGGG----CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 65031 0.7 0.953584
Target:  5'- ----aUCUCGACCCGAaCCUGAu--- -3'
miRNA:   3'- gauucAGAGCUGGGCUaGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 10668 0.72 0.905468
Target:  5'- -cAAGUCUCGgaccggggcuguGCCCacauggucaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 27982 0.72 0.905468
Target:  5'- -aGAGUgUCGAUCCGGUgCCGGAc-- -3'
miRNA:   3'- gaUUCAgAGCUGGGCUAgGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 88126 0.73 0.856909
Target:  5'- -cGAGUCUCGAUcgaucgcuccaggcgCCGAUCCCGuGAGc -3'
miRNA:   3'- gaUUCAGAGCUG---------------GGCUAGGGCuUUUa -5'
2884 5' -49.8 NC_001493.1 + 95853 0.66 0.995972
Target:  5'- -aGAGUCaCGAucgcaacaucCCCGcUCCCGAGGAa -3'
miRNA:   3'- gaUUCAGaGCU----------GGGCuAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 53429 0.7 0.93991
Target:  5'- -gGAGU-UCGGCCuCGGUCCCGAu--- -3'
miRNA:   3'- gaUUCAgAGCUGG-GCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 86576 0.68 0.979361
Target:  5'- aUGAGgucucUCUCGGCCgGGUCCUGGu--- -3'
miRNA:   3'- gAUUC-----AGAGCUGGgCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 28475 0.66 0.996581
Target:  5'- gUGAGUUcaUCGcgcaggaccACCCGAUCCCGu---- -3'
miRNA:   3'- gAUUCAG--AGC---------UGGGCUAGGGCuuuua -5'
2884 5' -49.8 NC_001493.1 + 35199 0.66 0.996581
Target:  5'- -gGAGcgCuUCGACCCGAgggaCCUGGAGGUc -3'
miRNA:   3'- gaUUCa-G-AGCUGGGCUa---GGGCUUUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.