miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 103042 0.71 0.923878
Target:  5'- aUGGGUC-CGAaCCGGUCCCGAc--- -3'
miRNA:   3'- gAUUCAGaGCUgGGCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 53429 0.7 0.93991
Target:  5'- -gGAGU-UCGGCCuCGGUCCCGAu--- -3'
miRNA:   3'- gaUUCAgAGCUGG-GCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 30328 0.7 0.944727
Target:  5'- ---cGUC-CGACCCGAUCCCc----- -3'
miRNA:   3'- gauuCAGaGCUGGGCUAGGGcuuuua -5'
2884 5' -49.8 NC_001493.1 + 15548 0.7 0.949284
Target:  5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3'
miRNA:   3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 131102 0.7 0.949284
Target:  5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3'
miRNA:   3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 34893 0.69 0.96143
Target:  5'- -----gUUCGACCCGGugaacgauucuUCCCGAAAGUa -3'
miRNA:   3'- gauucaGAGCUGGGCU-----------AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 110867 0.69 0.964986
Target:  5'- -aGGGUUugcgCGAUCCGGUCCCGGc--- -3'
miRNA:   3'- gaUUCAGa---GCUGGGCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 54943 0.69 0.968306
Target:  5'- -gGAG-CUCGcuCCCGcgGUCCCGAAAAUu -3'
miRNA:   3'- gaUUCaGAGCu-GGGC--UAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 12896 0.78 0.603121
Target:  5'- -gGGGUCUCGguggagagcGCCCGAUCCCGguGAg -3'
miRNA:   3'- gaUUCAGAGC---------UGGGCUAGGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 126148 0.77 0.678374
Target:  5'- uCUAAGUCUCGgaccggggcuguGCCCacacggucuGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10593 0.77 0.678374
Target:  5'- uCUAAGUCUCGgaccggggcuguGCCCacacggucuGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126853 0.73 0.836726
Target:  5'- -gGGGUCaUCGAgcCCUGGUCCCGGGAGc -3'
miRNA:   3'- gaUUCAG-AGCU--GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 11299 0.73 0.836726
Target:  5'- -gGGGUCaUCGAgcCCUGGUCCCGGGAGc -3'
miRNA:   3'- gaUUCAG-AGCU--GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 128450 0.78 0.603121
Target:  5'- -gGGGUCUCGguggagagcGCCCGAUCCCGguGAg -3'
miRNA:   3'- gaUUCAGAGC---------UGGGCUAGGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 10724 0.87 0.20812
Target:  5'- -cGGGUCUCGACCaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGgCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126278 0.87 0.20812
Target:  5'- -cGGGUCUCGACCaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGgCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126252 0.92 0.10615
Target:  5'- uCUAAGUCUC-ACCCGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGcUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10619 1 0.038349
Target:  5'- -cGGGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126174 1 0.038349
Target:  5'- -cGGGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 110509 0.66 0.996581
Target:  5'- -aAGGUCga-GCCCGcgCCCGGAGu- -3'
miRNA:   3'- gaUUCAGagcUGGGCuaGGGCUUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.