miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 13578 0.67 0.991464
Target:  5'- -cGAGaC-CGACCCG-UCCCGAGGc- -3'
miRNA:   3'- gaUUCaGaGCUGGGCuAGGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 54943 0.69 0.968306
Target:  5'- -gGAG-CUCGcuCCCGcgGUCCCGAAAAUu -3'
miRNA:   3'- gaUUCaGAGCu-GGGC--UAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 24233 0.69 0.974263
Target:  5'- --uGGUUggCGACCCugaGUCCCGAAGAa -3'
miRNA:   3'- gauUCAGa-GCUGGGc--UAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 86576 0.68 0.979361
Target:  5'- aUGAGgucucUCUCGGCCgGGUCCUGGu--- -3'
miRNA:   3'- gAUUC-----AGAGCUGGgCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 111182 0.68 0.979361
Target:  5'- --cGGUCUCGAC---AUCCCGAAAAUc -3'
miRNA:   3'- gauUCAGAGCUGggcUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 88507 0.68 0.981609
Target:  5'- gUGGGUUgacacaCGACCCGAaccUCUCGGAAAg -3'
miRNA:   3'- gAUUCAGa-----GCUGGGCU---AGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 9124 0.68 0.983668
Target:  5'- -gGGGUCauccccgCGACCgCGcUCCCGggGAUg -3'
miRNA:   3'- gaUUCAGa------GCUGG-GCuAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 124679 0.68 0.983668
Target:  5'- -gGGGUCauccccgCGACCgCGcUCCCGggGAUg -3'
miRNA:   3'- gaUUCAGa------GCUGG-GCuAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 110791 0.67 0.990206
Target:  5'- -cGAGUUUCGAagcggUCGAUCCCGGcgGUa -3'
miRNA:   3'- gaUUCAGAGCUg----GGCUAGGGCUuuUA- -5'
2884 5' -49.8 NC_001493.1 + 110867 0.69 0.964986
Target:  5'- -aGGGUUugcgCGAUCCGGUCCCGGc--- -3'
miRNA:   3'- gaUUCAGa---GCUGGGCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 34893 0.69 0.96143
Target:  5'- -----gUUCGACCCGGugaacgauucuUCCCGAAAGUa -3'
miRNA:   3'- gauucaGAGCUGGGCU-----------AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 131102 0.7 0.949284
Target:  5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3'
miRNA:   3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 115873 0.73 0.861756
Target:  5'- cCUuuGUCaccacCGGCCCGAuaaUCCCGAGAAUg -3'
miRNA:   3'- -GAuuCAGa----GCUGGGCU---AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 3708 0.71 0.918005
Target:  5'- ---cGUCUCGAaacuCCUGAagUCCCGAGGGUa -3'
miRNA:   3'- gauuCAGAGCU----GGGCU--AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 119262 0.71 0.918005
Target:  5'- ---cGUCUCGAaacuCCUGAagUCCCGAGGGUa -3'
miRNA:   3'- gauuCAGAGCU----GGGCU--AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 37553 0.71 0.923878
Target:  5'- -gGGGUCgUCGACCgGGUcgCCCGggGAg -3'
miRNA:   3'- gaUUCAG-AGCUGGgCUA--GGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 103042 0.71 0.923878
Target:  5'- aUGGGUC-CGAaCCGGUCCCGAc--- -3'
miRNA:   3'- gAUUCAGaGCUgGGCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 53429 0.7 0.93991
Target:  5'- -gGAGU-UCGGCCuCGGUCCCGAu--- -3'
miRNA:   3'- gaUUCAgAGCUGG-GCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 30328 0.7 0.944727
Target:  5'- ---cGUC-CGACCCGAUCCCc----- -3'
miRNA:   3'- gauuCAGaGCUGGGCUAGGGcuuuua -5'
2884 5' -49.8 NC_001493.1 + 15548 0.7 0.949284
Target:  5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3'
miRNA:   3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.