miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 319 0.73 0.861756
Target:  5'- cCUuuGUCaccacCGGCCCGAuaaUCCCGAGAAUg -3'
miRNA:   3'- -GAuuCAGa----GCUGGGCU---AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 3708 0.71 0.918005
Target:  5'- ---cGUCUCGAaacuCCUGAagUCCCGAGGGUa -3'
miRNA:   3'- gauuCAGAGCU----GGGCU--AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 4300 0.67 0.99259
Target:  5'- gUGGGggUUCGuuguucccacCCCGGUCCCGAGGAg -3'
miRNA:   3'- gAUUCa-GAGCu---------GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 7850 0.69 0.971396
Target:  5'- -cGAGUCUCGACgaUCGGguucCCCGggGGg -3'
miRNA:   3'- gaUUCAGAGCUG--GGCUa---GGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 9124 0.68 0.983668
Target:  5'- -gGGGUCauccccgCGACCgCGcUCCCGggGAUg -3'
miRNA:   3'- gaUUCAGa------GCUGG-GCuAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 10593 0.77 0.678374
Target:  5'- uCUAAGUCUCGgaccggggcuguGCCCacacggucuGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10619 1 0.038349
Target:  5'- -cGGGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10668 0.72 0.905468
Target:  5'- -cAAGUCUCGgaccggggcuguGCCCacauggucaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10698 1.06 0.016588
Target:  5'- uCUAAGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10724 0.87 0.20812
Target:  5'- -cGGGUCUCGACCaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGgCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10781 0.73 0.869651
Target:  5'- -aGAGUCUCGACCgCGGaggaCCCGGAu-- -3'
miRNA:   3'- gaUUCAGAGCUGG-GCUa---GGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 11299 0.73 0.836726
Target:  5'- -gGGGUCaUCGAgcCCUGGUCCCGGGAGc -3'
miRNA:   3'- gaUUCAG-AGCU--GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 12896 0.78 0.603121
Target:  5'- -gGGGUCUCGguggagagcGCCCGAUCCCGguGAg -3'
miRNA:   3'- gaUUCAGAGC---------UGGGCUAGGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 13578 0.67 0.991464
Target:  5'- -cGAGaC-CGACCCG-UCCCGAGGc- -3'
miRNA:   3'- gaUUCaGaGCUGGGCuAGGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 14491 0.68 0.979361
Target:  5'- uCUGAGUCUCGucaacACCCG--CUCGAGAGc -3'
miRNA:   3'- -GAUUCAGAGC-----UGGGCuaGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 15548 0.7 0.949284
Target:  5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3'
miRNA:   3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 17713 0.66 0.994488
Target:  5'- ---cGUCUCG-CCCGGUCCgugCGAGu-- -3'
miRNA:   3'- gauuCAGAGCuGGGCUAGG---GCUUuua -5'
2884 5' -49.8 NC_001493.1 + 19957 0.66 0.993595
Target:  5'- ----cUCUgG-UCCGGUCCCGAAGAUg -3'
miRNA:   3'- gauucAGAgCuGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 21924 0.66 0.995277
Target:  5'- -cAGGUUUccCGACCCGGguacgUCCCGAu--- -3'
miRNA:   3'- gaUUCAGA--GCUGGGCU-----AGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 24233 0.69 0.974263
Target:  5'- --uGGUUggCGACCCugaGUCCCGAAGAa -3'
miRNA:   3'- gauUCAGa-GCUGGGc--UAGGGCUUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.