Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2884 | 5' | -49.8 | NC_001493.1 | + | 133267 | 0.66 | 0.994488 |
Target: 5'- ---cGUCUCG-CCCGGUCCgugCGAGu-- -3' miRNA: 3'- gauuCAGAGCuGGGCUAGG---GCUUuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 131102 | 0.7 | 0.949284 |
Target: 5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3' miRNA: 3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 129132 | 0.67 | 0.991464 |
Target: 5'- -cGAGaC-CGACCCG-UCCCGAGGc- -3' miRNA: 3'- gaUUCaGaGCUGGGCuAGGGCUUUua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 128450 | 0.78 | 0.603121 |
Target: 5'- -gGGGUCUCGguggagagcGCCCGAUCCCGguGAg -3' miRNA: 3'- gaUUCAGAGC---------UGGGCUAGGGCuuUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126853 | 0.73 | 0.836726 |
Target: 5'- -gGGGUCaUCGAgcCCUGGUCCCGGGAGc -3' miRNA: 3'- gaUUCAG-AGCU--GGGCUAGGGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126335 | 0.73 | 0.869651 |
Target: 5'- -aGAGUCUCGACCgCGGaggaCCCGGAu-- -3' miRNA: 3'- gaUUCAGAGCUGG-GCUa---GGGCUUuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126278 | 0.87 | 0.20812 |
Target: 5'- -cGGGUCUCGACCaGAUCCCGAAAAUc -3' miRNA: 3'- gaUUCAGAGCUGGgCUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126252 | 0.92 | 0.10615 |
Target: 5'- uCUAAGUCUC-ACCCGAUCCCGAAAAUc -3' miRNA: 3'- -GAUUCAGAGcUGGGCUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126223 | 0.72 | 0.905468 |
Target: 5'- -cAAGUCUCGgaccggggcuguGCCCacauggucaGAUCCCGAAAAUc -3' miRNA: 3'- gaUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126174 | 1 | 0.038349 |
Target: 5'- -cGGGUCUCGACCCGAUCCCGAAAAUc -3' miRNA: 3'- gaUUCAGAGCUGGGCUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 126148 | 0.77 | 0.678374 |
Target: 5'- uCUAAGUCUCGgaccggggcuguGCCCacacggucuGAUCCCGAAAAUc -3' miRNA: 3'- -GAUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 124679 | 0.68 | 0.983668 |
Target: 5'- -gGGGUCauccccgCGACCgCGcUCCCGggGAUg -3' miRNA: 3'- gaUUCAGa------GCUGG-GCuAGGGCuuUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 123404 | 0.69 | 0.971396 |
Target: 5'- -cGAGUCUCGACgaUCGGguucCCCGggGGg -3' miRNA: 3'- gaUUCAGAGCUG--GGCUa---GGGCuuUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 119854 | 0.67 | 0.99259 |
Target: 5'- gUGGGggUUCGuuguucccacCCCGGUCCCGAGGAg -3' miRNA: 3'- gAUUCa-GAGCu---------GGGCUAGGGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 119262 | 0.71 | 0.918005 |
Target: 5'- ---cGUCUCGAaacuCCUGAagUCCCGAGGGUa -3' miRNA: 3'- gauuCAGAGCU----GGGCU--AGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 115873 | 0.73 | 0.861756 |
Target: 5'- cCUuuGUCaccacCGGCCCGAuaaUCCCGAGAAUg -3' miRNA: 3'- -GAuuCAGa----GCUGGGCU---AGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 111182 | 0.68 | 0.979361 |
Target: 5'- --cGGUCUCGAC---AUCCCGAAAAUc -3' miRNA: 3'- gauUCAGAGCUGggcUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 110867 | 0.69 | 0.964986 |
Target: 5'- -aGGGUUugcgCGAUCCGGUCCCGGc--- -3' miRNA: 3'- gaUUCAGa---GCUGGGCUAGGGCUuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 110791 | 0.67 | 0.990206 |
Target: 5'- -cGAGUUUCGAagcggUCGAUCCCGGcgGUa -3' miRNA: 3'- gaUUCAGAGCUg----GGCUAGGGCUuuUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 110509 | 0.66 | 0.996581 |
Target: 5'- -aAGGUCga-GCCCGcgCCCGGAGu- -3' miRNA: 3'- gaUUCAGagcUGGGCuaGGGCUUUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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