miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 10698 1.06 0.016588
Target:  5'- uCUAAGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126174 1 0.038349
Target:  5'- -cGGGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10619 1 0.038349
Target:  5'- -cGGGUCUCGACCCGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126252 0.92 0.10615
Target:  5'- uCUAAGUCUC-ACCCGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGcUGGGCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126278 0.87 0.20812
Target:  5'- -cGGGUCUCGACCaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGgCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10724 0.87 0.20812
Target:  5'- -cGGGUCUCGACCaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGCUGGgCUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 12896 0.78 0.603121
Target:  5'- -gGGGUCUCGguggagagcGCCCGAUCCCGguGAg -3'
miRNA:   3'- gaUUCAGAGC---------UGGGCUAGGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 128450 0.78 0.603121
Target:  5'- -gGGGUCUCGguggagagcGCCCGAUCCCGguGAg -3'
miRNA:   3'- gaUUCAGAGC---------UGGGCUAGGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 126148 0.77 0.678374
Target:  5'- uCUAAGUCUCGgaccggggcuguGCCCacacggucuGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 10593 0.77 0.678374
Target:  5'- uCUAAGUCUCGgaccggggcuguGCCCacacggucuGAUCCCGAAAAUc -3'
miRNA:   3'- -GAUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126853 0.73 0.836726
Target:  5'- -gGGGUCaUCGAgcCCUGGUCCCGGGAGc -3'
miRNA:   3'- gaUUCAG-AGCU--GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 11299 0.73 0.836726
Target:  5'- -gGGGUCaUCGAgcCCUGGUCCCGGGAGc -3'
miRNA:   3'- gaUUCAG-AGCU--GGGCUAGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 87327 0.73 0.853633
Target:  5'- -gAGGUgcaCUCgGugCCGAUCCCGggGGUg -3'
miRNA:   3'- gaUUCA---GAG-CugGGCUAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 88126 0.73 0.856909
Target:  5'- -cGAGUCUCGAUcgaucgcuccaggcgCCGAUCCCGuGAGc -3'
miRNA:   3'- gaUUCAGAGCUG---------------GGCUAGGGCuUUUa -5'
2884 5' -49.8 NC_001493.1 + 115873 0.73 0.861756
Target:  5'- cCUuuGUCaccacCGGCCCGAuaaUCCCGAGAAUg -3'
miRNA:   3'- -GAuuCAGa----GCUGGGCU---AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 319 0.73 0.861756
Target:  5'- cCUuuGUCaccacCGGCCCGAuaaUCCCGAGAAUg -3'
miRNA:   3'- -GAuuCAGa----GCUGGGCU---AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 126335 0.73 0.869651
Target:  5'- -aGAGUCUCGACCgCGGaggaCCCGGAu-- -3'
miRNA:   3'- gaUUCAGAGCUGG-GCUa---GGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 10781 0.73 0.869651
Target:  5'- -aGAGUCUCGACCgCGGaggaCCCGGAu-- -3'
miRNA:   3'- gaUUCAGAGCUGG-GCUa---GGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 126223 0.72 0.905468
Target:  5'- -cAAGUCUCGgaccggggcuguGCCCacauggucaGAUCCCGAAAAUc -3'
miRNA:   3'- gaUUCAGAGC------------UGGG---------CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 27982 0.72 0.905468
Target:  5'- -aGAGUgUCGAUCCGGUgCCGGAc-- -3'
miRNA:   3'- gaUUCAgAGCUGGGCUAgGGCUUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.