miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 5' -49.8 NC_001493.1 + 26374 0.67 0.991464
Target:  5'- -cGGGUUUCGGCCCcagCCCGGu--- -3'
miRNA:   3'- gaUUCAGAGCUGGGcuaGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 27982 0.72 0.905468
Target:  5'- -aGAGUgUCGAUCCGGUgCCGGAc-- -3'
miRNA:   3'- gaUUCAgAGCUGGGCUAgGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 28475 0.66 0.996581
Target:  5'- gUGAGUUcaUCGcgcaggaccACCCGAUCCCGu---- -3'
miRNA:   3'- gAUUCAG--AGC---------UGGGCUAGGGCuuuua -5'
2884 5' -49.8 NC_001493.1 + 30328 0.7 0.944727
Target:  5'- ---cGUC-CGACCCGAUCCCc----- -3'
miRNA:   3'- gauuCAGaGCUGGGCUAGGGcuuuua -5'
2884 5' -49.8 NC_001493.1 + 32726 0.66 0.994816
Target:  5'- --cGGUC-CGGCCCGAgaccccuucuucgucUCCCGGGc-- -3'
miRNA:   3'- gauUCAGaGCUGGGCU---------------AGGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 34893 0.69 0.96143
Target:  5'- -----gUUCGACCCGGugaacgauucuUCCCGAAAGUa -3'
miRNA:   3'- gauucaGAGCUGGGCU-----------AGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 35199 0.66 0.996581
Target:  5'- -gGAGcgCuUCGACCCGAgggaCCUGGAGGUc -3'
miRNA:   3'- gaUUCa-G-AGCUGGGCUa---GGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 37553 0.71 0.923878
Target:  5'- -gGGGUCgUCGACCgGGUcgCCCGggGAg -3'
miRNA:   3'- gaUUCAG-AGCUGGgCUA--GGGCuuUUa -5'
2884 5' -49.8 NC_001493.1 + 45555 0.7 0.939414
Target:  5'- gUAGGUCUCcaugcgcacguugGGCCCGGugaauugcUCCCGAAGGc -3'
miRNA:   3'- gAUUCAGAG-------------CUGGGCU--------AGGGCUUUUa -5'
2884 5' -49.8 NC_001493.1 + 51884 0.69 0.96143
Target:  5'- -aAGGUCaaGGCCCG-UCCCGAGc-- -3'
miRNA:   3'- gaUUCAGagCUGGGCuAGGGCUUuua -5'
2884 5' -49.8 NC_001493.1 + 53429 0.7 0.93991
Target:  5'- -gGAGU-UCGGCCuCGGUCCCGAu--- -3'
miRNA:   3'- gaUUCAgAGCUGG-GCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 54943 0.69 0.968306
Target:  5'- -gGAG-CUCGcuCCCGcgGUCCCGAAAAUu -3'
miRNA:   3'- gaUUCaGAGCu-GGGC--UAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 59883 0.66 0.993595
Target:  5'- -cGGG-CUaccCGACCCcuauGAUCCCGAAAAUu -3'
miRNA:   3'- gaUUCaGA---GCUGGG----CUAGGGCUUUUA- -5'
2884 5' -49.8 NC_001493.1 + 65031 0.7 0.953584
Target:  5'- ----aUCUCGACCCGAaCCUGAu--- -3'
miRNA:   3'- gauucAGAGCUGGGCUaGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 67026 0.66 0.994488
Target:  5'- ---uGUUUCGugCCGAUcagcCCCGGGAu- -3'
miRNA:   3'- gauuCAGAGCugGGCUA----GGGCUUUua -5'
2884 5' -49.8 NC_001493.1 + 82580 0.68 0.976915
Target:  5'- gCUGGGcCUgGACCaCGAUCUCGAu--- -3'
miRNA:   3'- -GAUUCaGAgCUGG-GCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 86576 0.68 0.979361
Target:  5'- aUGAGgucucUCUCGGCCgGGUCCUGGu--- -3'
miRNA:   3'- gAUUC-----AGAGCUGGgCUAGGGCUuuua -5'
2884 5' -49.8 NC_001493.1 + 87327 0.73 0.853633
Target:  5'- -gAGGUgcaCUCgGugCCGAUCCCGggGGUg -3'
miRNA:   3'- gaUUCA---GAG-CugGGCUAGGGCuuUUA- -5'
2884 5' -49.8 NC_001493.1 + 88126 0.73 0.856909
Target:  5'- -cGAGUCUCGAUcgaucgcuccaggcgCCGAUCCCGuGAGc -3'
miRNA:   3'- gaUUCAGAGCUG---------------GGCUAGGGCuUUUa -5'
2884 5' -49.8 NC_001493.1 + 88507 0.68 0.981609
Target:  5'- gUGGGUUgacacaCGACCCGAaccUCUCGGAAAg -3'
miRNA:   3'- gAUUCAGa-----GCUGGGCU---AGGGCUUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.