Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2884 | 5' | -49.8 | NC_001493.1 | + | 107600 | 0.68 | 0.981393 |
Target: 5'- -aAGGUUggcggcgUUGACaCCGGUCCCGggGGg -3' miRNA: 3'- gaUUCAG-------AGCUG-GGCUAGGGCuuUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 86576 | 0.68 | 0.979361 |
Target: 5'- aUGAGgucucUCUCGGCCgGGUCCUGGu--- -3' miRNA: 3'- gAUUC-----AGAGCUGGgCUAGGGCUuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 111182 | 0.68 | 0.979361 |
Target: 5'- --cGGUCUCGAC---AUCCCGAAAAUc -3' miRNA: 3'- gauUCAGAGCUGggcUAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 14491 | 0.68 | 0.979361 |
Target: 5'- uCUGAGUCUCGucaacACCCG--CUCGAGAGc -3' miRNA: 3'- -GAUUCAGAGC-----UGGGCuaGGGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 82580 | 0.68 | 0.976915 |
Target: 5'- gCUGGGcCUgGACCaCGAUCUCGAu--- -3' miRNA: 3'- -GAUUCaGAgCUGG-GCUAGGGCUuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 24233 | 0.69 | 0.974263 |
Target: 5'- --uGGUUggCGACCCugaGUCCCGAAGAa -3' miRNA: 3'- gauUCAGa-GCUGGGc--UAGGGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 7850 | 0.69 | 0.971396 |
Target: 5'- -cGAGUCUCGACgaUCGGguucCCCGggGGg -3' miRNA: 3'- gaUUCAGAGCUG--GGCUa---GGGCuuUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 123404 | 0.69 | 0.971396 |
Target: 5'- -cGAGUCUCGACgaUCGGguucCCCGggGGg -3' miRNA: 3'- gaUUCAGAGCUG--GGCUa---GGGCuuUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 54943 | 0.69 | 0.968306 |
Target: 5'- -gGAG-CUCGcuCCCGcgGUCCCGAAAAUu -3' miRNA: 3'- gaUUCaGAGCu-GGGC--UAGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 88980 | 0.69 | 0.968306 |
Target: 5'- -gGAGUucCUCGACCCGAUgUUCGAGGGc -3' miRNA: 3'- gaUUCA--GAGCUGGGCUA-GGGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 110867 | 0.69 | 0.964986 |
Target: 5'- -aGGGUUugcgCGAUCCGGUCCCGGc--- -3' miRNA: 3'- gaUUCAGa---GCUGGGCUAGGGCUuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 51884 | 0.69 | 0.96143 |
Target: 5'- -aAGGUCaaGGCCCG-UCCCGAGc-- -3' miRNA: 3'- gaUUCAGagCUGGGCuAGGGCUUuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 34893 | 0.69 | 0.96143 |
Target: 5'- -----gUUCGACCCGGugaacgauucuUCCCGAAAGUa -3' miRNA: 3'- gauucaGAGCUGGGCU-----------AGGGCUUUUA- -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 65031 | 0.7 | 0.953584 |
Target: 5'- ----aUCUCGACCCGAaCCUGAu--- -3' miRNA: 3'- gauucAGAGCUGGGCUaGGGCUuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 15548 | 0.7 | 0.949284 |
Target: 5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3' miRNA: 3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 131102 | 0.7 | 0.949284 |
Target: 5'- -aGGGUCUCGAUgCGcUCaCCGAGAAg -3' miRNA: 3'- gaUUCAGAGCUGgGCuAG-GGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 30328 | 0.7 | 0.944727 |
Target: 5'- ---cGUC-CGACCCGAUCCCc----- -3' miRNA: 3'- gauuCAGaGCUGGGCUAGGGcuuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 53429 | 0.7 | 0.93991 |
Target: 5'- -gGAGU-UCGGCCuCGGUCCCGAu--- -3' miRNA: 3'- gaUUCAgAGCUGG-GCUAGGGCUuuua -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 45555 | 0.7 | 0.939414 |
Target: 5'- gUAGGUCUCcaugcgcacguugGGCCCGGugaauugcUCCCGAAGGc -3' miRNA: 3'- gAUUCAGAG-------------CUGGGCU--------AGGGCUUUUa -5' |
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2884 | 5' | -49.8 | NC_001493.1 | + | 37553 | 0.71 | 0.923878 |
Target: 5'- -gGGGUCgUCGACCgGGUcgCCCGggGAg -3' miRNA: 3'- gaUUCAG-AGCUGGgCUA--GGGCuuUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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