miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28847 5' -56.1 NC_006146.1 + 106982 0.66 0.889926
Target:  5'- -cCCAGuaGGCAcaagGGUGCCucguGGAUGAGAc -3'
miRNA:   3'- aaGGUC--CUGUa---CCACGG----CCUACUCUa -5'
28847 5' -56.1 NC_006146.1 + 114115 0.66 0.889926
Target:  5'- aUUCaaaAGGuCGUGGUGUucauguCGGAUGAGGc -3'
miRNA:   3'- -AAGg--UCCuGUACCACG------GCCUACUCUa -5'
28847 5' -56.1 NC_006146.1 + 59537 0.66 0.882957
Target:  5'- cUCCAGGugGgGGUGCagcguggcgaUGGAgGAGAUg -3'
miRNA:   3'- aAGGUCCugUaCCACG----------GCCUaCUCUA- -5'
28847 5' -56.1 NC_006146.1 + 98220 0.66 0.882957
Target:  5'- uUUCCAGgGGCAUGGcguaGCCgGGGUGcAGGg -3'
miRNA:   3'- -AAGGUC-CUGUACCa---CGG-CCUAC-UCUa -5'
28847 5' -56.1 NC_006146.1 + 76572 0.66 0.868339
Target:  5'- -aCCAGGACAUGGU-CCccGUGGGGa -3'
miRNA:   3'- aaGGUCCUGUACCAcGGccUACUCUa -5'
28847 5' -56.1 NC_006146.1 + 101259 0.66 0.868339
Target:  5'- ---gGGGACAUGGUGCUGGggGcAGu- -3'
miRNA:   3'- aaggUCCUGUACCACGGCCuaC-UCua -5'
28847 5' -56.1 NC_006146.1 + 72189 0.67 0.852847
Target:  5'- -aCgAGGACGcGGcgGCCGGAUGGGc- -3'
miRNA:   3'- aaGgUCCUGUaCCa-CGGCCUACUCua -5'
28847 5' -56.1 NC_006146.1 + 33345 0.67 0.852847
Target:  5'- cUCCGGGGCAgccgGGUGgCCGccGGUGGGu- -3'
miRNA:   3'- aAGGUCCUGUa---CCAC-GGC--CUACUCua -5'
28847 5' -56.1 NC_006146.1 + 2845 0.67 0.84479
Target:  5'- -gCCAGGAgCggGGUGCCGGuUGuGGc -3'
miRNA:   3'- aaGGUCCU-GuaCCACGGCCuACuCUa -5'
28847 5' -56.1 NC_006146.1 + 50851 0.67 0.836533
Target:  5'- gUCCAGG-C-UGGUGggGGAUGAGAg -3'
miRNA:   3'- aAGGUCCuGuACCACggCCUACUCUa -5'
28847 5' -56.1 NC_006146.1 + 81645 0.67 0.836533
Target:  5'- -gCCGGGACGUuggggcucggagGGUGCCGGGgaagcggcGGGAc -3'
miRNA:   3'- aaGGUCCUGUA------------CCACGGCCUa-------CUCUa -5'
28847 5' -56.1 NC_006146.1 + 167751 0.67 0.836533
Target:  5'- -aUCAGGGCGcagGG-GCCGGGUGGGc- -3'
miRNA:   3'- aaGGUCCUGUa--CCaCGGCCUACUCua -5'
28847 5' -56.1 NC_006146.1 + 59663 0.68 0.786068
Target:  5'- aUCCGGGGCAguucugucgugagUcacggcggcaaugccGGUGCCGGAggcgGAGGUg -3'
miRNA:   3'- aAGGUCCUGU-------------A---------------CCACGGCCUa---CUCUA- -5'
28847 5' -56.1 NC_006146.1 + 105185 0.68 0.773851
Target:  5'- gUCCAGuGACcgGG-GCCGGGgagccgGGGGUg -3'
miRNA:   3'- aAGGUC-CUGuaCCaCGGCCUa-----CUCUA- -5'
28847 5' -56.1 NC_006146.1 + 51210 0.69 0.744853
Target:  5'- --aCAGGGCAUccacgaggccggGGUGgCGGGUGAGGUu -3'
miRNA:   3'- aagGUCCUGUA------------CCACgGCCUACUCUA- -5'
28847 5' -56.1 NC_006146.1 + 137003 0.69 0.744853
Target:  5'- cUCCAGGACggGGguagGCCGGGcacaccccgGGGAg -3'
miRNA:   3'- aAGGUCCUGuaCCa---CGGCCUa--------CUCUa -5'
28847 5' -56.1 NC_006146.1 + 87352 0.69 0.724997
Target:  5'- -gCCGGGACAUGG-GaCUGGAUGAc-- -3'
miRNA:   3'- aaGGUCCUGUACCaC-GGCCUACUcua -5'
28847 5' -56.1 NC_006146.1 + 116822 0.69 0.714941
Target:  5'- gUCCAGGACGU-GUGCCGGGa----- -3'
miRNA:   3'- aAGGUCCUGUAcCACGGCCUacucua -5'
28847 5' -56.1 NC_006146.1 + 116885 0.7 0.704813
Target:  5'- cUCCGGaGGCGccaccUGGUGCCGGcccUGAGGg -3'
miRNA:   3'- aAGGUC-CUGU-----ACCACGGCCu--ACUCUa -5'
28847 5' -56.1 NC_006146.1 + 133065 0.7 0.684376
Target:  5'- cUCCAGGG--UGGUuCCGGGUGGGGg -3'
miRNA:   3'- aAGGUCCUguACCAcGGCCUACUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.