Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28853 | 3' | -65.4 | NC_006146.1 | + | 51694 | 1.05 | 0.000891 |
Target: 5'- aAACCGGGUGGCGGCUCCCGGCCGUCAu -3' miRNA: 3'- -UUGGCCCACCGCCGAGGGCCGGCAGU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 68044 | 0.77 | 0.105714 |
Target: 5'- cGACCaGGUGGCGGCUgcCCUGGCUGcCAa -3' miRNA: 3'- -UUGGcCCACCGCCGA--GGGCCGGCaGU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 125099 | 0.76 | 0.125532 |
Target: 5'- cGGCCGuGGcGGCGGCcuUCCuCGGCCGUCc -3' miRNA: 3'- -UUGGC-CCaCCGCCG--AGG-GCCGGCAGu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 115364 | 0.74 | 0.151633 |
Target: 5'- uGGCCGGcGUGGCGGCggagcuggaggcCCUGGCCGcUCGc -3' miRNA: 3'- -UUGGCC-CACCGCCGa-----------GGGCCGGC-AGU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 120408 | 0.72 | 0.232405 |
Target: 5'- cGACgGGGUGGgGGCcaaCCUGGCCaUCAa -3' miRNA: 3'- -UUGgCCCACCgCCGa--GGGCCGGcAGU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 44694 | 0.71 | 0.254437 |
Target: 5'- uGCCGGuGUGGCGGCgg-UGGCCGUg- -3' miRNA: 3'- uUGGCC-CACCGCCGaggGCCGGCAgu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 71865 | 0.71 | 0.254437 |
Target: 5'- cGCCGGGcccugGGgGGcCUCUacaCGGCCGUCAc -3' miRNA: 3'- uUGGCCCa----CCgCC-GAGG---GCCGGCAGU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 2858 | 0.71 | 0.266081 |
Target: 5'- uGCCGGuuGUGGcCGGCUUcuaCCGGaCCGUCGa -3' miRNA: 3'- uUGGCC--CACC-GCCGAG---GGCC-GGCAGU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 146676 | 0.71 | 0.272064 |
Target: 5'- -cCCGGGcggugGGCGGC-CCCGGCCc--- -3' miRNA: 3'- uuGGCCCa----CCGCCGaGGGCCGGcagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 33107 | 0.7 | 0.290658 |
Target: 5'- cAGCCGGGUGGCcgccGGCggguucgCCgGGCCGc-- -3' miRNA: 3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 33231 | 0.7 | 0.290658 |
Target: 5'- cAGCCGGGUGGCcgccGGCggguccgCCgGGCCGc-- -3' miRNA: 3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 33274 | 0.7 | 0.310234 |
Target: 5'- -uCCGGGUGGgGGguggCCCGGCUGggCAc -3' miRNA: 3'- uuGGCCCACCgCCga--GGGCCGGCa-GU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 33150 | 0.7 | 0.310234 |
Target: 5'- -uCCGGGUGGgGGguggCCCGGCUGggCAc -3' miRNA: 3'- uuGGCCCACCgCCga--GGGCCGGCa-GU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 114481 | 0.7 | 0.316978 |
Target: 5'- uACCGGG-GGCaugacgcuuaGGCUCCCGGucCCGUg- -3' miRNA: 3'- uUGGCCCaCCG----------CCGAGGGCC--GGCAgu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 168306 | 0.69 | 0.323833 |
Target: 5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3' miRNA: 3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 167374 | 0.69 | 0.323833 |
Target: 5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3' miRNA: 3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 170169 | 0.69 | 0.323833 |
Target: 5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3' miRNA: 3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 169238 | 0.69 | 0.323833 |
Target: 5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3' miRNA: 3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 53602 | 0.69 | 0.352347 |
Target: 5'- uGCCGGGgaaaggGcGCGGCaCCgGGCCGUgCAc -3' miRNA: 3'- uUGGCCCa-----C-CGCCGaGGgCCGGCA-GU- -5' |
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28853 | 3' | -65.4 | NC_006146.1 | + | 32979 | 0.69 | 0.359747 |
Target: 5'- cGCUGGGUcGCGGCUgcccccggaaccCCCGGCCcuGUCc -3' miRNA: 3'- uUGGCCCAcCGCCGA------------GGGCCGG--CAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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