miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 3' -65.4 NC_006146.1 + 120408 0.72 0.232405
Target:  5'- cGACgGGGUGGgGGCcaaCCUGGCCaUCAa -3'
miRNA:   3'- -UUGgCCCACCgCCGa--GGGCCGGcAGU- -5'
28853 3' -65.4 NC_006146.1 + 167206 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 169070 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 131066 0.66 0.491935
Target:  5'- cGCCGGcccacUGuGCGGCcgaggccgCCgGGCCGUCAa -3'
miRNA:   3'- uUGGCCc----AC-CGCCGa-------GGgCCGGCAGU- -5'
28853 3' -65.4 NC_006146.1 + 33107 0.7 0.290658
Target:  5'- cAGCCGGGUGGCcgccGGCggguucgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 33231 0.7 0.290658
Target:  5'- cAGCCGGGUGGCcgccGGCggguccgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 33274 0.7 0.310234
Target:  5'- -uCCGGGUGGgGGguggCCCGGCUGggCAc -3'
miRNA:   3'- uuGGCCCACCgCCga--GGGCCGGCa-GU- -5'
28853 3' -65.4 NC_006146.1 + 114481 0.7 0.316978
Target:  5'- uACCGGG-GGCaugacgcuuaGGCUCCCGGucCCGUg- -3'
miRNA:   3'- uUGGCCCaCCG----------CCGAGGGCC--GGCAgu -5'
28853 3' -65.4 NC_006146.1 + 169238 0.69 0.323833
Target:  5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3'
miRNA:   3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 65704 0.67 0.422753
Target:  5'- cACCGGGcaccccCGGCUcCCCGGCCccgGUCAc -3'
miRNA:   3'- uUGGCCCacc---GCCGA-GGGCCGG---CAGU- -5'
28853 3' -65.4 NC_006146.1 + 98300 0.69 0.359747
Target:  5'- --gUGGGgcugagGGCGuGCUCCgUGGCCGUCu -3'
miRNA:   3'- uugGCCCa-----CCGC-CGAGG-GCCGGCAGu -5'
28853 3' -65.4 NC_006146.1 + 168306 0.69 0.323833
Target:  5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3'
miRNA:   3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 44694 0.71 0.254437
Target:  5'- uGCCGGuGUGGCGGCgg-UGGCCGUg- -3'
miRNA:   3'- uUGGCC-CACCGCCGaggGCCGGCAgu -5'
28853 3' -65.4 NC_006146.1 + 33353 0.68 0.406385
Target:  5'- cAGCCGGGUGGCcgccGGUggguccgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 2858 0.71 0.266081
Target:  5'- uGCCGGuuGUGGcCGGCUUcuaCCGGaCCGUCGa -3'
miRNA:   3'- uUGGCC--CACC-GCCGAG---GGCC-GGCAGU- -5'
28853 3' -65.4 NC_006146.1 + 167374 0.69 0.323833
Target:  5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3'
miRNA:   3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 116157 0.67 0.422753
Target:  5'- cACUGGGUGaCGGC-CCUGGuCCGcUCAg -3'
miRNA:   3'- uUGGCCCACcGCCGaGGGCC-GGC-AGU- -5'
28853 3' -65.4 NC_006146.1 + 168138 0.67 0.448031
Target:  5'- -cCCGGGgGGCGGCgCgCGGCCuUCc -3'
miRNA:   3'- uuGGCCCaCCGCCGaGgGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 146676 0.71 0.272064
Target:  5'- -cCCGGGcggugGGCGGC-CCCGGCCc--- -3'
miRNA:   3'- uuGGCCCa----CCGCCGaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 33150 0.7 0.310234
Target:  5'- -uCCGGGUGGgGGguggCCCGGCUGggCAc -3'
miRNA:   3'- uuGGCCCACCgCCga--GGGCCGGCa-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.