miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 3' -65.4 NC_006146.1 + 296 0.68 0.406385
Target:  5'- -cCCGGG-GGCGGg-CCCGGCgCGcUCGc -3'
miRNA:   3'- uuGGCCCaCCGCCgaGGGCCG-GC-AGU- -5'
28853 3' -65.4 NC_006146.1 + 2858 0.71 0.266081
Target:  5'- uGCCGGuuGUGGcCGGCUUcuaCCGGaCCGUCGa -3'
miRNA:   3'- uUGGCC--CACC-GCCGAG---GGCC-GGCAGU- -5'
28853 3' -65.4 NC_006146.1 + 15410 0.67 0.46534
Target:  5'- cGCCaGGUGGCcucagaggGGCUggCCCGGCUG-CAg -3'
miRNA:   3'- uUGGcCCACCG--------CCGA--GGGCCGGCaGU- -5'
28853 3' -65.4 NC_006146.1 + 27623 0.67 0.448031
Target:  5'- cACUGGGUGGCcagggaaGUUCCgGGCCagcGUCAc -3'
miRNA:   3'- uUGGCCCACCGc------CGAGGgCCGG---CAGU- -5'
28853 3' -65.4 NC_006146.1 + 32979 0.69 0.359747
Target:  5'- cGCUGGGUcGCGGCUgcccccggaaccCCCGGCCcuGUCc -3'
miRNA:   3'- uUGGCCCAcCGCCGA------------GGGCCGG--CAGu -5'
28853 3' -65.4 NC_006146.1 + 33107 0.7 0.290658
Target:  5'- cAGCCGGGUGGCcgccGGCggguucgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 33150 0.7 0.310234
Target:  5'- -uCCGGGUGGgGGguggCCCGGCUGggCAc -3'
miRNA:   3'- uuGGCCCACCgCCga--GGGCCGGCa-GU- -5'
28853 3' -65.4 NC_006146.1 + 33231 0.7 0.290658
Target:  5'- cAGCCGGGUGGCcgccGGCggguccgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 33274 0.7 0.310234
Target:  5'- -uCCGGGUGGgGGguggCCCGGCUGggCAc -3'
miRNA:   3'- uuGGCCCACCgCCga--GGGCCGGCa-GU- -5'
28853 3' -65.4 NC_006146.1 + 33353 0.68 0.406385
Target:  5'- cAGCCGGGUGGCcgccGGUggguccgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 36233 0.66 0.510049
Target:  5'- cGGCCGGGgaggaggcagGGCGGCUUCUGgagaGCUGUgAa -3'
miRNA:   3'- -UUGGCCCa---------CCGCCGAGGGC----CGGCAgU- -5'
28853 3' -65.4 NC_006146.1 + 44080 0.66 0.491935
Target:  5'- uGCCGGGacuggGGUGGUUCCaccucgGGCCG-CGc -3'
miRNA:   3'- uUGGCCCa----CCGCCGAGGg-----CCGGCaGU- -5'
28853 3' -65.4 NC_006146.1 + 44210 0.67 0.46011
Target:  5'- cAGCCGGG-GGCGGUgccuuggugaccgucUCCUcuGGCCGggCGg -3'
miRNA:   3'- -UUGGCCCaCCGCCG---------------AGGG--CCGGCa-GU- -5'
28853 3' -65.4 NC_006146.1 + 44694 0.71 0.254437
Target:  5'- uGCCGGuGUGGCGGCgg-UGGCCGUg- -3'
miRNA:   3'- uUGGCC-CACCGCCGaggGCCGGCAgu -5'
28853 3' -65.4 NC_006146.1 + 51694 1.05 0.000891
Target:  5'- aAACCGGGUGGCGGCUCCCGGCCGUCAu -3'
miRNA:   3'- -UUGGCCCACCGCCGAGGGCCGGCAGU- -5'
28853 3' -65.4 NC_006146.1 + 53602 0.69 0.352347
Target:  5'- uGCCGGGgaaaggGcGCGGCaCCgGGCCGUgCAc -3'
miRNA:   3'- uUGGCCCa-----C-CGCCGaGGgCCGGCA-GU- -5'
28853 3' -65.4 NC_006146.1 + 65704 0.67 0.422753
Target:  5'- cACCGGGcaccccCGGCUcCCCGGCCccgGUCAc -3'
miRNA:   3'- uUGGCCCacc---GCCGA-GGGCCGG---CAGU- -5'
28853 3' -65.4 NC_006146.1 + 68044 0.77 0.105714
Target:  5'- cGACCaGGUGGCGGCUgcCCUGGCUGcCAa -3'
miRNA:   3'- -UUGGcCCACCGCCGA--GGGCCGGCaGU- -5'
28853 3' -65.4 NC_006146.1 + 71865 0.71 0.254437
Target:  5'- cGCCGGGcccugGGgGGcCUCUacaCGGCCGUCAc -3'
miRNA:   3'- uUGGCCCa----CCgCC-GAGG---GCCGGCAGU- -5'
28853 3' -65.4 NC_006146.1 + 72364 0.66 0.510049
Target:  5'- gGACCGGcUGGCGGCgacgaaaCCCGaGUCGg-- -3'
miRNA:   3'- -UUGGCCcACCGCCGa------GGGC-CGGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.