Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28857 | 3' | -57.1 | NC_006146.1 | + | 51616 | 0.71 | 0.614902 |
Target: 5'- uCGGGAcagccgGCUGAGGUUGAgggACgGUGACUAc -3' miRNA: 3'- uGCCCU------CGACUCCGACU---UG-CACUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 115550 | 0.71 | 0.625033 |
Target: 5'- cGCGGuGGCgGGGGCUGGAgGcGACCGc -3' miRNA: 3'- -UGCCcUCGaCUCCGACUUgCaCUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 147105 | 0.7 | 0.655428 |
Target: 5'- -gGGcGAGCUGGGGCUcAGCG-GGCCc -3' miRNA: 3'- ugCC-CUCGACUCCGAcUUGCaCUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 43985 | 0.7 | 0.665533 |
Target: 5'- aGCGGGAGagGAGGCUGAGua-GGCCGg -3' miRNA: 3'- -UGCCCUCgaCUCCGACUUgcaCUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 50733 | 0.7 | 0.685656 |
Target: 5'- aGCGGGGGCgacGGGGCgucggGAAgGgGGCCGu -3' miRNA: 3'- -UGCCCUCGa--CUCCGa----CUUgCaCUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 139129 | 0.7 | 0.685656 |
Target: 5'- uUGGGGGCUGuGGGCcGAACGggGGCUc -3' miRNA: 3'- uGCCCUCGAC-UCCGaCUUGCa-CUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 95519 | 0.7 | 0.695657 |
Target: 5'- cCGGGAGCUGucGGGUgcGGCGccUGGCCAg -3' miRNA: 3'- uGCCCUCGAC--UCCGacUUGC--ACUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 97914 | 0.69 | 0.712534 |
Target: 5'- --aGGAGCUGAGGC-GAGCccccucggaggcccGUGACCu -3' miRNA: 3'- ugcCCUCGACUCCGaCUUG--------------CACUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 137846 | 0.69 | 0.73505 |
Target: 5'- -gGGGGGCUcGGGGUgggUGGGCGUGuCCc -3' miRNA: 3'- ugCCCUCGA-CUCCG---ACUUGCACuGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 138740 | 0.69 | 0.744701 |
Target: 5'- uCGGGuGGCUGA-GCUGAGCGgccuGCCAc -3' miRNA: 3'- uGCCC-UCGACUcCGACUUGCac--UGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 108857 | 0.68 | 0.773039 |
Target: 5'- gAUGGGAacGCUGAcGGCUGGaauGCGgcagaGGCCGa -3' miRNA: 3'- -UGCCCU--CGACU-CCGACU---UGCa----CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 44314 | 0.68 | 0.782251 |
Target: 5'- gUGGGGGCUGGGGC----CGUGGCa- -3' miRNA: 3'- uGCCCUCGACUCCGacuuGCACUGgu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 40739 | 0.68 | 0.79133 |
Target: 5'- gGCGGGcccguGCuUGGGGCUGGccacggACGUGgACCu -3' miRNA: 3'- -UGCCCu----CG-ACUCCGACU------UGCAC-UGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 81646 | 0.67 | 0.809057 |
Target: 5'- cCGGGAcGUUGGGGCUcgGAGgGUG-CCGg -3' miRNA: 3'- uGCCCU-CGACUCCGA--CUUgCACuGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 29598 | 0.67 | 0.809057 |
Target: 5'- cCGGGGGCUcagccAGGCUGAACcc-GCCAa -3' miRNA: 3'- uGCCCUCGAc----UCCGACUUGcacUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 150445 | 0.67 | 0.815116 |
Target: 5'- -gGGGAGUUGuagaagccggacagGGGCUGGAUgacaGUGGCCc -3' miRNA: 3'- ugCCCUCGAC--------------UCCGACUUG----CACUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 42260 | 0.67 | 0.817688 |
Target: 5'- cGCGaGGAGCUGGcucaGCUGGGCGacACCGg -3' miRNA: 3'- -UGC-CCUCGACUc---CGACUUGCacUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 127146 | 0.67 | 0.817688 |
Target: 5'- cGCGuGGAGCUGGacGGCgucauGCGcGACCAc -3' miRNA: 3'- -UGC-CCUCGACU--CCGacu--UGCaCUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 98296 | 0.67 | 0.817688 |
Target: 5'- gGCGguGGGGCUGAgGGCgUGcucCGUGGCCGu -3' miRNA: 3'- -UGC--CCUCGACU-CCG-ACuu-GCACUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 36658 | 0.67 | 0.834448 |
Target: 5'- cGCGGGGGUucucUGAGGCUacAUG-GGCCu -3' miRNA: 3'- -UGCCCUCG----ACUCCGAcuUGCaCUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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