miRNA display CGI


Results 41 - 60 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 50288 0.66 0.470876
Target:  5'- -aGGGGCgcaggagaucugUCaGgCGCCGCC--GGGCCu -3'
miRNA:   3'- gaCCCCG------------AGcCgGCGGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 51156 0.67 0.420779
Target:  5'- -aGcGGCagaGGgCGCCGCUGUGGGUg -3'
miRNA:   3'- gaCcCCGag-CCgGCGGCGGCACCCGg -5'
28861 3' -67.3 NC_006146.1 + 51545 0.69 0.31344
Target:  5'- -cGGGGCagccgccguacgugaUgacccUGGgCGCCGCCGggagGGGCCc -3'
miRNA:   3'- gaCCCCG---------------A-----GCCgGCGGCGGCa---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 52137 0.68 0.366598
Target:  5'- gCUcGGGCcccaccaggUCGaaGCCGCUGCCGUuGGCCu -3'
miRNA:   3'- -GAcCCCG---------AGC--CGGCGGCGGCAcCCGG- -5'
28861 3' -67.3 NC_006146.1 + 52839 0.7 0.256047
Target:  5'- -gGaGGGC-CGaGCCGCCGCCGcccccgcccggGGGCUc -3'
miRNA:   3'- gaC-CCCGaGC-CGGCGGCGGCa----------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 53017 0.72 0.190752
Target:  5'- cCUGGgccucacgcggcuGGCcgCGGCCGCCGCCGagagguaagggGGGCg -3'
miRNA:   3'- -GACC-------------CCGa-GCCGGCGGCGGCa----------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 53204 0.68 0.352025
Target:  5'- uUGGGGggCGGCgUGCCaaacuCCGcGGGCCu -3'
miRNA:   3'- gACCCCgaGCCG-GCGGc----GGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 53334 0.66 0.445434
Target:  5'- -aGGaGGCcCGGCgGCCGCg--GGGCg -3'
miRNA:   3'- gaCC-CCGaGCCGgCGGCGgcaCCCGg -5'
28861 3' -67.3 NC_006146.1 + 53734 0.68 0.366598
Target:  5'- -cGGGaGCcgCGGCUG-CGCCG-GGGCg -3'
miRNA:   3'- gaCCC-CGa-GCCGGCgGCGGCaCCCGg -5'
28861 3' -67.3 NC_006146.1 + 54879 0.66 0.470876
Target:  5'- gCUGcGGGCguagCGGgguCCGCucgCGCCGUcuGGCCg -3'
miRNA:   3'- -GAC-CCCGa---GCC---GGCG---GCGGCAc-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 54956 0.66 0.462312
Target:  5'- -cGGGGCgaccGCCGCCGCCGcuaccgcuGCCc -3'
miRNA:   3'- gaCCCCGagc-CGGCGGCGGCacc-----CGG- -5'
28861 3' -67.3 NC_006146.1 + 55693 0.81 0.044782
Target:  5'- --cGGGCaCGGCCGCCGCCGggGGGCUc -3'
miRNA:   3'- gacCCCGaGCCGGCGGCGGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 55810 0.67 0.389224
Target:  5'- -cGGGGCgguggaagaGGCCGUCccgGCCuggGUGGGCg -3'
miRNA:   3'- gaCCCCGag-------CCGGCGG---CGG---CACCCGg -5'
28861 3' -67.3 NC_006146.1 + 56871 0.67 0.412746
Target:  5'- gCUGGGGCU-GGCgGCCcCCGUguucGGGg- -3'
miRNA:   3'- -GACCCCGAgCCGgCGGcGGCA----CCCgg -5'
28861 3' -67.3 NC_006146.1 + 57040 0.66 0.470876
Target:  5'- -cGGGGCgaaGCCGCCaggguugagGCgGgaggGGGCCu -3'
miRNA:   3'- gaCCCCGagcCGGCGG---------CGgCa---CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 57143 0.69 0.295383
Target:  5'- -gGGGGCUggUGGCCGaccgccgcuuccaCGCCuuccucaccccaGUGGGCCc -3'
miRNA:   3'- gaCCCCGA--GCCGGCg------------GCGG------------CACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 57200 0.71 0.229187
Target:  5'- ---cGGCU--GCCGCCGCCGUccccGGGCCg -3'
miRNA:   3'- gaccCCGAgcCGGCGGCGGCA----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 57366 0.7 0.27337
Target:  5'- -gGGaGGCUgCGGCgGUggCGCCGgUGGGCUg -3'
miRNA:   3'- gaCC-CCGA-GCCGgCG--GCGGC-ACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 57927 0.67 0.404808
Target:  5'- -aGGGcGCU-GGCCGgCGCCGccaUGGuGCUg -3'
miRNA:   3'- gaCCC-CGAgCCGGCgGCGGC---ACC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 61597 0.73 0.151557
Target:  5'- ---cGGCUgcagCGGCCGCgGCCG-GGGCCg -3'
miRNA:   3'- gaccCCGA----GCCGGCGgCGGCaCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.