miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 137655 0.7 0.245005
Target:  5'- -cGGGGCagCGGCCcggcggacCCGCCG-GcGGCCa -3'
miRNA:   3'- gaCCCCGa-GCCGGc-------GGCGGCaC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 137778 0.7 0.245005
Target:  5'- -cGGGGCagCGGCCcggcgaacCCGCCG-GcGGCCa -3'
miRNA:   3'- gaCCCCGa-GCCGGc-------GGCGGCaC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 92235 0.7 0.249374
Target:  5'- -gGGGGCgggcccggccugUGGCUGCUGCUGgggggcGGGCCc -3'
miRNA:   3'- gaCCCCGa-----------GCCGGCGGCGGCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 117878 0.7 0.250476
Target:  5'- -cGGcGGCcgCGGCCaGCCG-CGUGaGGCCc -3'
miRNA:   3'- gaCC-CCGa-GCCGG-CGGCgGCAC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 97849 0.7 0.250476
Target:  5'- cCUGGaGGagggGGCCGCCGaCCccGGGCCg -3'
miRNA:   3'- -GACC-CCgag-CCGGCGGC-GGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 47053 0.7 0.256047
Target:  5'- -aGGGGC-CGGUCGCCGgUGUcggugaggGGGCg -3'
miRNA:   3'- gaCCCCGaGCCGGCGGCgGCA--------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 52839 0.7 0.256047
Target:  5'- -gGaGGGC-CGaGCCGCCGCCGcccccgcccggGGGCUc -3'
miRNA:   3'- gaC-CCCGaGC-CGGCGGCGGCa----------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 100900 0.7 0.256047
Target:  5'- cCUGGGuCUCGGCCGugggguccCCGaCCGUGcuguucuuGGCCa -3'
miRNA:   3'- -GACCCcGAGCCGGC--------GGC-GGCAC--------CCGG- -5'
28861 3' -67.3 NC_006146.1 + 127734 0.7 0.260007
Target:  5'- aUGGGGCUgGGCCggagaGCCuggagaagauuaucGCCGaccucaGGGCCa -3'
miRNA:   3'- gACCCCGAgCCGG-----CGG--------------CGGCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 118072 0.7 0.27337
Target:  5'- -cGGcGGCUCGGCCcuCCGCauccUGGGCa -3'
miRNA:   3'- gaCC-CCGAGCCGGc-GGCGgc--ACCCGg -5'
28861 3' -67.3 NC_006146.1 + 57366 0.7 0.27337
Target:  5'- -gGGaGGCUgCGGCgGUggCGCCGgUGGGCUg -3'
miRNA:   3'- gaCC-CCGA-GCCGgCG--GCGGC-ACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 110878 0.69 0.27935
Target:  5'- uCUcGGGCUCGGgCGCagGCgGggacgGGGCCg -3'
miRNA:   3'- -GAcCCCGAGCCgGCGg-CGgCa----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 135509 0.69 0.27935
Target:  5'- -gGGGGUggccgGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGag---CCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 135416 0.69 0.27935
Target:  5'- -gGGGGUggccgGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGag---CCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 135323 0.69 0.27935
Target:  5'- -gGGGGUggccgGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGag---CCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 135230 0.69 0.27935
Target:  5'- -gGGGGUggccgGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGag---CCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 135137 0.69 0.27935
Target:  5'- -gGGGGUggccgGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGag---CCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 126014 0.69 0.27935
Target:  5'- -gGGGGCggugGGCUuCUGCUGcUGGGCCg -3'
miRNA:   3'- gaCCCCGag--CCGGcGGCGGC-ACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 117544 0.69 0.27935
Target:  5'- -cGGGGcCUgGGCCGCauucagGCUGUucaggguauGGGCCg -3'
miRNA:   3'- gaCCCC-GAgCCGGCGg-----CGGCA---------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 135602 0.69 0.27935
Target:  5'- -gGGGGUggccgGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGag---CCGGCGGCGGCaCCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.