miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 3694 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 56871 0.67 0.412746
Target:  5'- gCUGGGGCU-GGCgGCCcCCGUguucGGGg- -3'
miRNA:   3'- -GACCCCGAgCCGgCGGcGGCA----CCCgg -5'
28861 3' -67.3 NC_006146.1 + 33416 0.67 0.412746
Target:  5'- cCUGGGcaccGCUgcGCCGCCGCuCGguccugGGGCUc -3'
miRNA:   3'- -GACCC----CGAgcCGGCGGCG-GCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 154892 0.67 0.412746
Target:  5'- -gGGGGCagGGCC-UCGCCc-GGGCUg -3'
miRNA:   3'- gaCCCCGagCCGGcGGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 124441 0.67 0.412746
Target:  5'- gCUGGucGGCacgcaucCGGCCuacGCCGCCGccuuccuggGGGCCc -3'
miRNA:   3'- -GACC--CCGa------GCCGG---CGGCGGCa--------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 107475 0.67 0.412746
Target:  5'- gUGGcGCaUGGCCG-CGCUGaGGGCCg -3'
miRNA:   3'- gACCcCGaGCCGGCgGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 125059 0.67 0.407971
Target:  5'- -aGGGGCUCGGgggacgccauccCCGUCuccgucuucgaggcgGCCGUGGcggcgGCCu -3'
miRNA:   3'- gaCCCCGAGCC------------GGCGG---------------CGGCACC-----CGG- -5'
28861 3' -67.3 NC_006146.1 + 130477 0.67 0.404808
Target:  5'- -cGGGGC-C-GCUGCCGCCccGGGUg -3'
miRNA:   3'- gaCCCCGaGcCGGCGGCGGcaCCCGg -5'
28861 3' -67.3 NC_006146.1 + 6413 0.67 0.404808
Target:  5'- aUGGGGUcccuUUGGCC-CaggGCCauGUGGGCCc -3'
miRNA:   3'- gACCCCG----AGCCGGcGg--CGG--CACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 131075 0.67 0.404808
Target:  5'- aCUGuGcGGCcgaGGCCGCCggGCCGUcaacGGCCg -3'
miRNA:   3'- -GAC-C-CCGag-CCGGCGG--CGGCAc---CCGG- -5'
28861 3' -67.3 NC_006146.1 + 57927 0.67 0.404808
Target:  5'- -aGGGcGCU-GGCCGgCGCCGccaUGGuGCUg -3'
miRNA:   3'- gaCCC-CGAgCCGGCgGCGGC---ACC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 64653 0.67 0.404808
Target:  5'- -cGGGGCcaggGGCaCGUCGCCGUGGu-- -3'
miRNA:   3'- gaCCCCGag--CCG-GCGGCGGCACCcgg -5'
28861 3' -67.3 NC_006146.1 + 14119 0.67 0.402445
Target:  5'- -cGGGGCUgcuggcggCGGCCuacaGCCagguguacgcgcugGCCGUGGaGCUg -3'
miRNA:   3'- gaCCCCGA--------GCCGG----CGG--------------CGGCACC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 153615 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 156692 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 150537 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 147459 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 144381 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 141303 0.67 0.396967
Target:  5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3'
miRNA:   3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5'
28861 3' -67.3 NC_006146.1 + 55810 0.67 0.389224
Target:  5'- -cGGGGCgguggaagaGGCCGUCccgGCCuggGUGGGCg -3'
miRNA:   3'- gaCCCCGag-------CCGGCGG---CGG---CACCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.