miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 168443 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 169375 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170306 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 53017 0.72 0.190752
Target:  5'- cCUGGgccucacgcggcuGGCcgCGGCCGCCGCCGagagguaagggGGGCg -3'
miRNA:   3'- -GACC-------------CCGa-GCCGGCGGCGGCa----------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 167642 0.72 0.19119
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33170 0.72 0.195619
Target:  5'- gCUGGGcaccGC-CGcGCCGCCGCuCGguccUGGGCCu -3'
miRNA:   3'- -GACCC----CGaGC-CGGCGGCG-GC----ACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 45115 0.72 0.204746
Target:  5'- ---cGGCUCGGCCGgugaCCGCCG-GGaGCCu -3'
miRNA:   3'- gaccCCGAGCCGGC----GGCGGCaCC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 130312 0.71 0.209447
Target:  5'- -cGGaGGUUCGGCCGCC-Ca--GGGCCa -3'
miRNA:   3'- gaCC-CCGAGCCGGCGGcGgcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 68029 0.71 0.217651
Target:  5'- aCUGGGGCcCGGCCacgaccagguggcgGCUGCCcUGGcuGCCa -3'
miRNA:   3'- -GACCCCGaGCCGG--------------CGGCGGcACC--CGG- -5'
28861 3' -67.3 NC_006146.1 + 102829 0.71 0.219127
Target:  5'- -gGGGGCUCuGCgcuugcucgCGCCGCuCGUGGaGCUg -3'
miRNA:   3'- gaCCCCGAGcCG---------GCGGCG-GCACC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 34236 0.71 0.224109
Target:  5'- -gGGGGa--GGCCGCCGCaaggaCGccGGGCCg -3'
miRNA:   3'- gaCCCCgagCCGGCGGCG-----GCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 138066 0.71 0.224109
Target:  5'- -gGGGGa--GGCCGCCGCaaggaCGccGGGCCg -3'
miRNA:   3'- gaCCCCgagCCGGCGGCG-----GCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 77918 0.71 0.225622
Target:  5'- -aGGGGCgggCGGCCucgcaggugccggggGUCGCUGUuuggucuGGGCCg -3'
miRNA:   3'- gaCCCCGa--GCCGG---------------CGGCGGCA-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 98300 0.71 0.227653
Target:  5'- gUGGGGCUgagggcgugcuccgUGGCCGUCugGCaCG-GGGCCg -3'
miRNA:   3'- gACCCCGA--------------GCCGGCGG--CG-GCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 57200 0.71 0.229187
Target:  5'- ---cGGCU--GCCGCCGCCGUccccGGGCCg -3'
miRNA:   3'- gaccCCGAgcCGGCGGCGGCA----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 158860 0.71 0.238042
Target:  5'- aUGGGGCUggUGGCCGCacccgccacguagcUGCCGgucucGGGCa -3'
miRNA:   3'- gACCCCGA--GCCGGCG--------------GCGGCa----CCCGg -5'
28861 3' -67.3 NC_006146.1 + 43321 0.71 0.239634
Target:  5'- -cGGccGGCgCGGCCucgGCCGCCcaGGGCCa -3'
miRNA:   3'- gaCC--CCGaGCCGG---CGGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 44316 0.71 0.239634
Target:  5'- -gGGGGCUgGgGCCGUggcaGCCGgGGGCUu -3'
miRNA:   3'- gaCCCCGAgC-CGGCGg---CGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 92082 0.71 0.239634
Target:  5'- gCUGGGGggCGGCCcggccuggggcuGCUGCUGgggggcGGGCCc -3'
miRNA:   3'- -GACCCCgaGCCGG------------CGGCGGCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 137655 0.7 0.245005
Target:  5'- -cGGGGCagCGGCCcggcggacCCGCCG-GcGGCCa -3'
miRNA:   3'- gaCCCCGa-GCCGGc-------GGCGGCaC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.