Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28861 | 3' | -67.3 | NC_006146.1 | + | 151290 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 102328 | 0.66 | 0.465728 |
Target: 5'- -gGGGGCaggcccagaucgaucUCGGCuCGCCaGCgGUccGGGCa -3' miRNA: 3'- gaCCCCG---------------AGCCG-GCGG-CGgCA--CCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 39984 | 0.66 | 0.470016 |
Target: 5'- gCUGaGGCUgcugCGGCCcguagugGCCGgUGUGGGCg -3' miRNA: 3'- -GACcCCGA----GCCGG-------CGGCgGCACCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 24224 | 0.66 | 0.470876 |
Target: 5'- uUGGGGCcggGGCCGCCcaccgcCCGggaGGGUUg -3' miRNA: 3'- gACCCCGag-CCGGCGGc-----GGCa--CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 63088 | 0.66 | 0.470876 |
Target: 5'- -cGGGGCUUGGUaCGCaGaaG-GGGCCc -3' miRNA: 3'- gaCCCCGAGCCG-GCGgCggCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 13328 | 0.66 | 0.470876 |
Target: 5'- -gGGcGGUggagUCGGCCGCgGCCuacgcgGaGGCCa -3' miRNA: 3'- gaCC-CCG----AGCCGGCGgCGGca----C-CCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 115236 | 0.66 | 0.474324 |
Target: 5'- gCUGGccuucaacgccgccuGGCUcCGGCUGCUGCaccccucggGGGCCc -3' miRNA: 3'- -GACC---------------CCGA-GCCGGCGGCGgca------CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 148212 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 145134 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 142056 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 122803 | 0.66 | 0.452987 |
Target: 5'- -gGGcGGCcgaggccgcgcugUCGGCCGCCGUgagcgaguaCGUGGaCCg -3' miRNA: 3'- gaCC-CCG-------------AGCCGGCGGCG---------GCACCcGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 40861 | 0.66 | 0.440438 |
Target: 5'- uUGGaGGCcCGGCuCGCgguccggagacggaGCCG-GGGCCu -3' miRNA: 3'- gACC-CCGaGCCG-GCGg-------------CGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 64432 | 0.66 | 0.428906 |
Target: 5'- uUGGGGuCUCGG-CGCCgagacaGCCuUGGGUg -3' miRNA: 3'- gACCCC-GAGCCgGCGG------CGGcACCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 115912 | 0.66 | 0.462312 |
Target: 5'- -gGGGGCUucCGGCCaCC-CCGgguacggGGGCa -3' miRNA: 3'- gaCCCCGA--GCCGGcGGcGGCa------CCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 156692 | 0.67 | 0.396967 |
Target: 5'- gCUGGGGgUCgGGCUgGCCuGCCaggGGGCa -3' miRNA: 3'- -GACCCCgAG-CCGG-CGG-CGGca-CCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 14119 | 0.67 | 0.402445 |
Target: 5'- -cGGGGCUgcuggcggCGGCCuacaGCCagguguacgcgcugGCCGUGGaGCUg -3' miRNA: 3'- gaCCCCGA--------GCCGG----CGG--------------CGGCACC-CGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 57927 | 0.67 | 0.404808 |
Target: 5'- -aGGGcGCU-GGCCGgCGCCGccaUGGuGCUg -3' miRNA: 3'- gaCCC-CGAgCCGGCgGCGGC---ACC-CGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 6413 | 0.67 | 0.404808 |
Target: 5'- aUGGGGUcccuUUGGCC-CaggGCCauGUGGGCCc -3' miRNA: 3'- gACCCCG----AGCCGGcGg--CGG--CACCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 125059 | 0.67 | 0.407971 |
Target: 5'- -aGGGGCUCGGgggacgccauccCCGUCuccgucuucgaggcgGCCGUGGcggcgGCCu -3' miRNA: 3'- gaCCCCGAGCC------------GGCGG---------------CGGCACC-----CGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 124441 | 0.67 | 0.412746 |
Target: 5'- gCUGGucGGCacgcaucCGGCCuacGCCGCCGccuuccuggGGGCCc -3' miRNA: 3'- -GACC--CCGa------GCCGG---CGGCGGCa--------CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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