miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 34236 0.71 0.224109
Target:  5'- -gGGGGa--GGCCGCCGCaaggaCGccGGGCCg -3'
miRNA:   3'- gaCCCCgagCCGGCGGCG-----GCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 35505 0.68 0.366598
Target:  5'- cCUGGGGUUCGGCCGCgCGUguuaguugcuUGUugauGCCu -3'
miRNA:   3'- -GACCCCGAGCCGGCG-GCG----------GCAcc--CGG- -5'
28861 3' -67.3 NC_006146.1 + 39766 0.67 0.420779
Target:  5'- gCUGGGGCUUGGa-GUCagGCU-UGGGCCc -3'
miRNA:   3'- -GACCCCGAGCCggCGG--CGGcACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 39832 0.73 0.166429
Target:  5'- -cGGcGGcCUCGGCCGCaca-GUGGGCCg -3'
miRNA:   3'- gaCC-CC-GAGCCGGCGgcggCACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 39984 0.66 0.470016
Target:  5'- gCUGaGGCUgcugCGGCCcguagugGCCGgUGUGGGCg -3'
miRNA:   3'- -GACcCCGA----GCCGG-------CGGCgGCACCCGg -5'
28861 3' -67.3 NC_006146.1 + 40861 0.66 0.440438
Target:  5'- uUGGaGGCcCGGCuCGCgguccggagacggaGCCG-GGGCCu -3'
miRNA:   3'- gACC-CCGaGCCG-GCGg-------------CGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 41844 0.69 0.317417
Target:  5'- -gGGGGCUgucUGcGCCGgCGUC-UGGGCCc -3'
miRNA:   3'- gaCCCCGA---GC-CGGCgGCGGcACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 42081 0.66 0.452987
Target:  5'- -aGGGugaccccCUCuGCCGCCGCCccucccuGUGuGGCCg -3'
miRNA:   3'- gaCCCc------GAGcCGGCGGCGG-------CAC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 42624 1.1 0.000331
Target:  5'- cCUGGGGCUCGGCCGCCGCCGUGGGCCu -3'
miRNA:   3'- -GACCCCGAGCCGGCGGCGGCACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 43321 0.71 0.239634
Target:  5'- -cGGccGGCgCGGCCucgGCCGCCcaGGGCCa -3'
miRNA:   3'- gaCC--CCGaGCCGG---CGGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 43641 0.69 0.310811
Target:  5'- -cGGGGCgUGGCCGCC-UgGggagagGGGCCc -3'
miRNA:   3'- gaCCCCGaGCCGGCGGcGgCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 44087 0.66 0.45383
Target:  5'- aCUGGGGUgguuccaccUCgGGCCGCgCGCUc-GGcGCCg -3'
miRNA:   3'- -GACCCCG---------AG-CCGGCG-GCGGcaCC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 44316 0.71 0.239634
Target:  5'- -gGGGGCUgGgGCCGUggcaGCCGgGGGCUu -3'
miRNA:   3'- gaCCCCGAgC-CGGCGg---CGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 45115 0.72 0.204746
Target:  5'- ---cGGCUCGGCCGgugaCCGCCG-GGaGCCu -3'
miRNA:   3'- gaccCCGAGCCGGC----GGCGGCaCC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 45544 0.66 0.445434
Target:  5'- cCUuGGGCUUGGCCGCC-CU---GGCCu -3'
miRNA:   3'- -GAcCCCGAGCCGGCGGcGGcacCCGG- -5'
28861 3' -67.3 NC_006146.1 + 45795 0.68 0.330946
Target:  5'- -aGGGGaCggccgaggaaGGCCGCCGCCac-GGCCg -3'
miRNA:   3'- gaCCCC-Gag--------CCGGCGGCGGcacCCGG- -5'
28861 3' -67.3 NC_006146.1 + 47053 0.7 0.256047
Target:  5'- -aGGGGC-CGGUCGCCGgUGUcggugaggGGGCg -3'
miRNA:   3'- gaCCCCGaGCCGGCGGCgGCA--------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 47397 0.68 0.344894
Target:  5'- cCUGGGG-UCGaCCGUgGCCa-GGGCCa -3'
miRNA:   3'- -GACCCCgAGCcGGCGgCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 47498 0.68 0.362183
Target:  5'- uCUGGucUUCGGCCGCCGCggccaGUuccagccagguugcgGGGCCc -3'
miRNA:   3'- -GACCccGAGCCGGCGGCGg----CA---------------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 48235 0.68 0.36365
Target:  5'- cCUGGGugaGCgccgcgCGGagggcccCCGCCGCCGUccuggcgcgaaagaGGGCCc -3'
miRNA:   3'- -GACCC---CGa-----GCC-------GGCGGCGGCA--------------CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.